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Information for unigene UN02727

FASTA Sequence
Unigene ID: UN02727Length: 1047 SSR 
TTTTTTTATTTTAAAATTTCGTTTTTATTAGGGTTCATTTCCGTCGTTCGTTCCCAGATTTTGATTTTAACCGGAAATATAAAGTC
ACTTTACTCCGGCGATTGTGAGGCTAATTGATCCTCCGGTGAGGTTCGATAAAAAAATGGAGGTAATCACTCATCCAACACCTCGA
ACTGTCGAAGAGGTCTTTACTGACTTCAGAGGTCGTCGAGCTGGTCTTATCAAGGCTCTCACTACCGATATGGTGAAGTTTTACCA
AACGTGCGATCCTGAGAAAGAGAACTTGTGCCTCTACGGACTTCCTAACGAGACATGGGAGGTTAATCTTCCCGTCGAGGAAGTTC
CTCCCGAGCTTCCTGAGCCTGCTCTTGGCATCAACTTCGCTAGAGACGGGATGCAAGAAAAGGACTGGGTGTCTTTGGTCGCTGTT
CACAGTGATTCCTGGCTCCTCTCTGTCGCGTTTTACTTTGGTGCACGTTTTGGGTTTGGTAAGAACGAGAGGAAGGAGCTCTTCCA
GATGATAAACGAGCTCCCAACCATTTTCGAGATTGTGACAGGCAATGCAAAGCAATCCAAGGATCTATCTGCCAACAACAACAACA
ACAACAACAGTAGCAAAAGCAAATCCAACGGCTTGAAGGTTCCAAAGATGTCATCTCCACCGCCTAAAGAAGAAGACGAGAGTGAG
AAATGGTTCCATGGGAAATGTGTGAAGATAACACCTGCAAAAGCGGAACACATCAAGCATTACAAATGCCCAACCTGCAGTAACAA
GAGAGCCAGGCCTTGATGATGCCTAAGTGAACAAAAGGTAAAAGAGTTAGGAGGAAGCTGTTGAAAGGAGGAGGAGAAGTTCCCAG
TTTATTGAACGAAAAGGCCAAAGATAAATGGGGTTTTAGAAGATGTAAGAAGGTTTAAAAAACACGTTTGCTTGCTTAGTCTTTGT
TTATGGATTCAGACTATTTACTATTGATGTGATGTTTTTCTTTGGATGCTTTGTTGTTGTTGTTGTTGTTAATGTCAATGCTACTA
CTGATTTGGCCTTGT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_001189502 protein alfin-like 6 [Arabidopsis thaliana]8614e-090
NP_178351 protein alfin-like 6 [Arabidopsis thaliana]8418e-088
AAM65374 putative PHD-type zinc finger protein [Arabidopsis thaliana]8418e-088
XP_002875129 PHD finger family protein [Arabidopsis lyrata subsp. lyrata]8273e-086
XP_002892811 PHD finger family protein [Arabidopsis lyrata subsp. lyrata]7826e-081

Swiss-Prot top hits (Blast detail)Scoree value
O81488 PHD finger protein At5g262106551e-067

TrEMBL top hits (Blast detail)Scoree value
Q8LAH0 Putative PHD-type zinc finger protein8415e-088
Q8S8M9 Putative PHD-type zinc finger protein8415e-088
Q8LA16 At1g145107806e-081
Q06A75 PHD57628e-079
B9S053 ATP synthase alpha subunit mitochondrial, putative7601e-078

Arabidopsis top hits (Blast detail)Scoree value
AT2G02470.1 AL6 (ALFIN-LIKE 6); DNA binding / methylated histone residue binding8413e-090
AT1G14510.1 AL7 (ALFIN-LIKE 7); DNA binding / methylated histone residue binding7804e-083
AT5G26210.1 AL4 (ALFIN-LIKE 4); DNA binding / methylated histone residue binding6551e-068
AT5G20510.1 AL5 (ALFIN-LIKE 5); DNA binding / methylated histone residue binding6541e-068
AT3G42790.1 AL3 (ALFIN-LIKE 3); DNA binding / methylated histone residue binding6433e-067

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
73  60%
 
81  20%
 
91  20%

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