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Information for unigene UN02738

FASTA Sequence
Unigene ID: UN02738Length: 1369 SSR 
GGACGACAAAAAGAAGAGTAAAAGTCAAAAAGTAAAGAGAAGCACTTTGTGAGAGAGAGAGAGAGAGAGAGAGAGAAAAACCCGCG
GAGGATGATGATGTCCGTCGCGGCGGTAGAGCAGTTGCGCAGAAAGAAGAAGAAGAAGAGGAGAAGGGTTGAGTCTCCATCATCAT
CATGTGGGTTAATGTCTTTGCCATATGACATGGTTCAAAACTGCTTGGCCCGCGTGTCTAGATCCGACCTAGGGGCCTTATCTCTG
GTCTCAAAGAGCATCCACTCACTGGTGGCTTCGCCGGAGATGTACGAGACCCGATGTCGAATGGGTTTGAGGGAGGAGTGCATCTA
CGTATGCTTGGGAACTAATTTTGGCACAATTACAAATCCTCTGGGATGGTTCATCCTCAGAAGAAAAGGGAATAATAGGCTGATCC
CAATCCCGATCCCTTCGTTCCCATCTCCGCGTAGAGCTACCTATGTCTCCATGGGATGTGGGATCTATGTAATTGGAGGAAGGATA
GAAGCCGTGACGACATCGCGTGTCTCCTTCCTGGATTGTCGGACTCACACGTGGAGCGAGCTCCCCTCCATGAGGTTTGCTCGCTG
TGAAGCCAACACAGGGGTTTTAGACGGAAAGATATACGTCATGGGAGGCTGCGGTGATCCATTCTCCCGCGACAATCCAGAGGTTT
TCGATCCAATGACGCAAACTTGGAGCAGTGTGTGTATACCTGATCCGGTGATGAGCAAGGAGGCTTGCAGGGTTGTTGGGCCGGAT
AATAATAATATTTCGTTCAAGTTTCGGAGTGAAGAAGGTTTGTGGAATGATTTATTTTTAAACGCAAGAGAGGATTGTTGTTGTGC
AATAGACAGGTTGTTATTCAGTTGTGATTTTGACGGGAGAATCAAGTGGTGTGACCCTTTGAGTGGGGTGAGGAAAGGGAGCCTGG
AGTGGTACACGGTGATTGGTTTGGATGATCTTCAAGGGTTCCTCAAGTTTGACACTTCCAACATAAATTCAATCATTTTCGATGGG
GAGTGTGCCGATGTGTGGAATTGCCATATGCTCAATCGTGGTTACACAAACGGCCTCCTAGGCTTAGTTCCGGGCTTCAAAATCAG
CAAATCCGCTGGCAACATTGTCATCTTCTGGTCCGTGCTCGTCGGGGATAAGTTGCAGGTTTGGTGTGCTGAGATTTCACTTGAGA
GGCGGGTGCACCACATTTGGGGGAACATCCAGTGCACTGATCATGTCTTCACTGTGGACCCTGACCTCTATATTTTGTCTACTATT
AATGTTAGTCTTTGAACATACTTTTTTTTTATCGCTCTTTTATTTACAGACTTAATTGGTAGACACTCTTTGTTGTAGC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002868960 hypothetical protein ARALYDRAFT_912541 [Arabidopsis lyrata subsp. lyrata]4646e-044
XP_002866962 hypothetical protein ARALYDRAFT_912622 [Arabidopsis lyrata subsp. lyrata]4638e-044
XP_002871008 hypothetical protein ARALYDRAFT_908166 [Arabidopsis lyrata subsp. lyrata]4054e-037
XP_002867842 hypothetical protein ARALYDRAFT_914524 [Arabidopsis lyrata subsp. lyrata]3761e-033
NP_195666 F-box/kelch-repeat protein [Arabidopsis thaliana]3714e-033

Swiss-Prot top hits (Blast detail)Scoree value
O80573 Putative F-box/kelch-repeat protein At2g440304061e-038
Q9FI70 F-box/kelch-repeat protein At5g490003811e-035
Q67XN8 F-box/kelch-repeat protein At4g395603712e-034
Q9LYY5 Putative F-box/kelch-repeat protein At5g030003585e-033
Q9SVA0 F-box/kelch-repeat protein At4g395803551e-032

TrEMBL top hits (Blast detail)Scoree value
A0MFD0 Putative uncharacterized protein (Fragment)4081e-037
O23199 Putative uncharacterized protein AT4g368403337e-029
Q6NL02 At5g395603256e-028
Q4ABZ3 117M18_273239e-028
Q9FKA6 Emb|CAB79695.13202e-027

Arabidopsis top hits (Blast detail)Scoree value
AT2G44030.1 kelch repeat-containing F-box family protein4061e-039
AT5G49000.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT4G39550.1); Has 5235 Blast hits to 3308 proteins in 165 species: Archae - 10; Bacteria - 167; Metazoa - 4114; Fungi - 13; Plants - 659; Viruses - 110; Other Eukaryotes - 162 (source: NCBI BLink).3811e-036
AT4G39560.1 kelch repeat-containing F-box family protein3711e-035
AT4G39560.2 kelch repeat-containing F-box family protein3711e-035
AT5G03000.1 kelch repeat-containing F-box family protein3584e-034

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
72  50%
 
91  25%
 
61  25%

Unigene MembersMember information