RadishBase

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Information for unigene UN02748

FASTA Sequence

Unigene ID: UN02748	Length: 1397	SSR
AAACCATTACTTTCAAGGCCTTCCTTCATCTTCTTCGTGGCTTCTTGCTCTGCCGCCCAACAATGGCGGTTTTCGGTGGCGCTAAT CTTGGTTCTGTTTCCTTCTCCTCTCATCTGCTCAACCAACAGTCTTGTTTTCTCTCTTGCCCTCTTAGACTCCCCTCTTCTTCTTC TTCTTCTTCAAATAAAACCTCTCTCCTCTTCGTCGTCAAGTCCTTCTCAGGCTCCGTAACCGCCAATACAGATACAAGTTCCGATC AATCCCTTCTCCGGGATACCTCCAACGATGCCGGACCTTCTCGGATGTCTACTGATTGGAAGCTGGCAAAAGCTTATTGTAAGAGT GGTGACACGTTTGAAGGCGAAGTCGAAGGCTTTAATGGTGGTGGCTTGCTTATTCGTTTTCATTCTCTTGTTGGCTTTCTTCCTTA TCCACAGTTAAGCCCTTCTCGTTCTTGTAGAGAGCCTCAGAAAAGCATTCACGAGATAGCTAAGACTTTGGTCGGCTCAGTACTTC CTGTTAAGGTTGTTCAAGCTGATGAGGAGAACAAAAAGTTGATCTTATCTGAGAAGTTAGCACTATGGCCAAAGTACTCACAAAAC GTTAACGTGGGGGATATATTTACCGGAAGAGTAGGTTCTGTTGAGGACTATGGTGCATTTATCCACATGCGCTTCGATGATGGTCT TTATCATCTAACCGGACTAGTCCATGTCTCTGAGGTCTCGTGGGATTACGTTCAAGATGTTAGAGATGTGTTGCGTGATGGTGATG AGGTTCGGGTTATTGTCACAAATATCGACAAAGAGAAATCAAGGATTACACTATCCATCAAACAACTGGAAGATGATCCTCTTCTA GAGACATTGGACAAAGTGATTTTAAAGGACAGCTCTGGTGGATCTCCTTCACTAAGCTCGAACAATGGGGATACAATTGAGCCTCT TCCAGGTCTAGAAACTATACTTGAAGAGCTACTGCAAGAAGACGGAATAGAAGCTGTGAAAATCAACAGGCAAGGATTTGAGAAAA GAGTGGTTTCACAAGACCTACAACTTTGGCTCTCAAATACACCACCTTCTGAAGGAAAGTTTGTTCTTCTTGCACGTGCTGGAAGA CAGGTACAAGGGATACACTTGACAACGTCTCTGGATCAACAAGGAATCAAGAAAGCGTTACAGCGAGTACTAGAACGCGTCCCCTA AAGAGACTTTGCTTCTTATTAGCCCCTAATTCAGCTATATGTGCATCTTCCCCAACAATAGTTTGGGTCATCATAGGCATATAATC AAATGGAGCAGCAGCTACTTGGGAAATCTAGAAAACGGGCAATGCAAATTCATTTGTAACACAACCTATGAAAAAATATATATGTT GATACTCACTCAATTCACACT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002885588 S1 RNA-binding domain-containing protein [Arabidopsis lyrata subsp. lyrata]	1690	4e-186
NP_566737 ribosomal protein S1-like RNA-binding domain-containing protein [Arabidopsis thaliana]	1485	3e-162
XP_002264430 PREDICTED: hypothetical protein [Vitis vinifera]	1125	1e-120
XP_002321102 predicted protein [Populus trichocarpa]	1094	6e-117
XP_002463530 hypothetical protein SORBIDRAFT_01g001480 [Sorghum bicolor]	879	5e-092

Swiss-Prot top hits (Blast detail)	Score	e value
P46228 30S ribosomal protein S1	229	5e-018
P50889 40S ribosomal protein S1	225	1e-017
P73530 30S ribosomal protein S1 homolog A	224	2e-017
Q89AJ3 30S ribosomal protein S1	213	3e-016
P38494 30S ribosomal protein S1 homolog	210	8e-016

TrEMBL top hits (Blast detail)	Score	e value
Q9LK47 AT3g23700/MYM9_3	1485	2e-162
B9IAB2 Predicted protein (Fragment)	1094	4e-117
C5WSY9 Putative uncharacterized protein Sb01g001480	879	3e-092
B4F9P4 Putative uncharacterized protein	872	2e-091
B6TZ31 RNA binding S1	870	4e-091

Arabidopsis top hits (Blast detail)	Score	e value
AT3G23700.1 S1 RNA-binding domain-containing protein	1486	7e-165
AT1G12800.1 S1 RNA-binding domain-containing protein	214	2e-017
AT5G30510.1 RPS1 (RIBOSOMAL PROTEIN S1); RNA binding / structural constituent of ribosome	208	1e-016
AT4G29060.1 emb2726 (embryo defective 2726); RNA binding / translation elongation factor	143	4e-009
AT4G29060.2 emb2726 (embryo defective 2726); RNA binding / translation elongation factor	143	4e-009

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


7	2			67%


8	1			33%

Unigene Members	Member information