Information for unigene UN02748
| FASTA Sequence |
| Unigene ID: UN02748 | Length: 1397 |
SSR | | AAACCATTACTTTCAAGGCCTTCCTTCATCTTCTTCGTGGCTTCTTGCTCTGCCGCCCAACAATGGCGGTTTTCGGTGGCGCTAAT
CTTGGTTCTGTTTCCTTCTCCTCTCATCTGCTCAACCAACAGTCTTGTTTTCTCTCTTGCCCTCTTAGACTCCCCTCTTCTTCTTC
TTCTTCTTCAAATAAAACCTCTCTCCTCTTCGTCGTCAAGTCCTTCTCAGGCTCCGTAACCGCCAATACAGATACAAGTTCCGATC
AATCCCTTCTCCGGGATACCTCCAACGATGCCGGACCTTCTCGGATGTCTACTGATTGGAAGCTGGCAAAAGCTTATTGTAAGAGT
GGTGACACGTTTGAAGGCGAAGTCGAAGGCTTTAATGGTGGTGGCTTGCTTATTCGTTTTCATTCTCTTGTTGGCTTTCTTCCTTA
TCCACAGTTAAGCCCTTCTCGTTCTTGTAGAGAGCCTCAGAAAAGCATTCACGAGATAGCTAAGACTTTGGTCGGCTCAGTACTTC
CTGTTAAGGTTGTTCAAGCTGATGAGGAGAACAAAAAGTTGATCTTATCTGAGAAGTTAGCACTATGGCCAAAGTACTCACAAAAC
GTTAACGTGGGGGATATATTTACCGGAAGAGTAGGTTCTGTTGAGGACTATGGTGCATTTATCCACATGCGCTTCGATGATGGTCT
TTATCATCTAACCGGACTAGTCCATGTCTCTGAGGTCTCGTGGGATTACGTTCAAGATGTTAGAGATGTGTTGCGTGATGGTGATG
AGGTTCGGGTTATTGTCACAAATATCGACAAAGAGAAATCAAGGATTACACTATCCATCAAACAACTGGAAGATGATCCTCTTCTA
GAGACATTGGACAAAGTGATTTTAAAGGACAGCTCTGGTGGATCTCCTTCACTAAGCTCGAACAATGGGGATACAATTGAGCCTCT
TCCAGGTCTAGAAACTATACTTGAAGAGCTACTGCAAGAAGACGGAATAGAAGCTGTGAAAATCAACAGGCAAGGATTTGAGAAAA
GAGTGGTTTCACAAGACCTACAACTTTGGCTCTCAAATACACCACCTTCTGAAGGAAAGTTTGTTCTTCTTGCACGTGCTGGAAGA
CAGGTACAAGGGATACACTTGACAACGTCTCTGGATCAACAAGGAATCAAGAAAGCGTTACAGCGAGTACTAGAACGCGTCCCCTA
AAGAGACTTTGCTTCTTATTAGCCCCTAATTCAGCTATATGTGCATCTTCCCCAACAATAGTTTGGGTCATCATAGGCATATAATC
AAATGGAGCAGCAGCTACTTGGGAAATCTAGAAAACGGGCAATGCAAATTCATTTGTAACACAACCTATGAAAAAATATATATGTT
GATACTCACTCAATTCACACT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002885588 S1 RNA-binding domain-containing protein [Arabidopsis lyrata subsp. lyrata] | 1690 | 4e-186 |
| NP_566737 ribosomal protein S1-like RNA-binding domain-containing protein [Arabidopsis thaliana] | 1485 | 3e-162 |
| XP_002264430 PREDICTED: hypothetical protein [Vitis vinifera] | 1125 | 1e-120 |
| XP_002321102 predicted protein [Populus trichocarpa] | 1094 | 6e-117 |
| XP_002463530 hypothetical protein SORBIDRAFT_01g001480 [Sorghum bicolor] | 879 | 5e-092 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P46228 30S ribosomal protein S1 | 229 | 5e-018 |
| P50889 40S ribosomal protein S1 | 225 | 1e-017 |
| P73530 30S ribosomal protein S1 homolog A | 224 | 2e-017 |
| Q89AJ3 30S ribosomal protein S1 | 213 | 3e-016 |
| P38494 30S ribosomal protein S1 homolog | 210 | 8e-016 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LK47 AT3g23700/MYM9_3 | 1485 | 2e-162 |
| B9IAB2 Predicted protein (Fragment) | 1094 | 4e-117 |
| C5WSY9 Putative uncharacterized protein Sb01g001480 | 879 | 3e-092 |
| B4F9P4 Putative uncharacterized protein | 872 | 2e-091 |
| B6TZ31 RNA binding S1 | 870 | 4e-091 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G23700.1 S1 RNA-binding domain-containing protein | 1486 | 7e-165 |
| AT1G12800.1 S1 RNA-binding domain-containing protein | 214 | 2e-017 |
| AT5G30510.1 RPS1 (RIBOSOMAL PROTEIN S1); RNA binding / structural constituent of ribosome | 208 | 1e-016 |
| AT4G29060.1 emb2726 (embryo defective 2726); RNA binding / translation elongation factor | 143 | 4e-009 |
| AT4G29060.2 emb2726 (embryo defective 2726); RNA binding / translation elongation factor | 143 | 4e-009 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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