RadishBase

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Information for unigene UN02762

FASTA Sequence

Unigene ID: UN02762	Length: 1091	SSR
GGATCTCCCTCTCTCTCTCTTCTAAGTTCGAACTCGAGAAATGGCGGTGGATTCTCCTACAGGAGTAATCATCATCGCCGCCGCCC TGTTTCTACATGCTGCGACAACCATGATTTTCGGCTCCGACGCGGTTCTCAAGCTGGAGAGATTGATTCCGCCGAGCCATGAGCTT AGCCTGGCTGAGCTCAGAGCTTTTGATTCAGCTCGCCATGGGAGGTTACTGCAGTCTCCTGTCGGCGGTGTTGTTGATTTCCCGGT TTACGGAGCCTCCGATCCGTTTCTCGTTGGACTTTACTATACAAAGGTTAAACTAGGGACACCCCCAAGAGAATTCAATGTTCAAA TCGACACGGGAAGTGATGTTTTATGGGTTACCTGCGCTTCCTGCAACGGCTGCCCCAAGACTAGTGAACTCCAAATTCAGCTAAGT TTCTTTGATCCTGGATCCTCATCCTCAGCTTCAATGGTTTCATGTTCAGATAAGAGATGTTACTCCAACTTCGAGTCAGAATCTGG CTGTTCTCCTAACAATCTCTGCTCCTATGCGTTCAAATATGGTGATGGAAGTGGCACTTCTGGTTACTACATCTCTGATTTCGTGT CCTTTGATACTGTCATTACCAGTACCTTGGCTATTAATTCATCTGCTCCCTTCGTATTCGGGTGTAGCAATTTACAAACCGGAGAC TTACAGAGGCCCAGGAGAGCAGTAGATGGCATATTTGGGTTAGGCCAGGGGAGTTTATCTGTAGTTTCACAGCTTGCTACGCAAGG ACTCGCACCACGAGTGTTCTCGCATTGTCTTAAGGGAGATAGTAACGGTGGAGGTGTAATGGTTCTAGGTCAGATCAAGAGACCGG GATACTGTCTATACTCCTCTTGTTCCATCACAGCTACATTATAATGTGAACCTGCAGAGCATTGCTGTGAACAATCAGATATTACC GATTGATCCATCTGTTTTCACAATAGCCACTGGTGATGGGACGATCATTGATACAGGACCACTCTTGCTTACCTTCCTGACGAAGC TTATATCCATTCATCAGCTATTGTAAGTGCTGTTTCACAGTATGGGCGTCCCATACATA

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002892447 aspartyl protease family protein [Arabidopsis lyrata subsp. lyrata]	1325	6e-144
NP_563808 aspartyl protease-like protein [Arabidopsis thaliana]	1320	2e-143
BAB10606 protease-like protein [Arabidopsis thaliana]	916	2e-096
NP_197676 aspartyl protease family protein [Arabidopsis thaliana]	916	2e-096
AAU05467 At5g22850 [Arabidopsis thaliana]	916	2e-096

Swiss-Prot top hits (Blast detail)	Score	e value
Q9S9K4 Aspartic proteinase-like protein 2	453	4e-044
Q9LX20 Aspartic proteinase-like protein 1	228	4e-018
Q766C2 Aspartic proteinase nepenthesin-2	195	3e-014
Q766C3 Aspartic proteinase nepenthesin-1	185	4e-013

TrEMBL top hits (Blast detail)	Score	e value
Q9FPD6 Putative uncharacterized protein At1g08210	1320	2e-143
Q0WRU5 Protease-like protein	916	1e-096
Q66GQ8 At5g22850	916	1e-096
Q9FFC3 Protease-like protein	916	1e-096
Q9SGD9 T23G18.7	888	2e-093

Arabidopsis top hits (Blast detail)	Score	e value
AT1G08210.1 aspartyl protease family protein	1320	9e-146
AT5G22850.1 aspartyl protease family protein	916	7e-099
AT2G36670.2 aspartyl protease family protein	792	2e-084
AT2G36670.1 aspartyl protease family protein	776	1e-082
AT3G02740.1 aspartyl protease family protein	519	7e-053

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


11	1			33%


6	1			33%


8	1			33%

Unigene Members	Member information