 |
Information for unigene UN02946
| FASTA Sequence |
| Unigene ID: UN02946 | Length: 797 |
SSR | | ATGTCATATACTCATTACTTGTCAATACATGATGGTTGTTGTTTAAAAGCTACAAAAAATATAGAGGTTGGTGTTGTAGAAAGATT
CAAGAGAAAGTGGGAATCAAGAGAACGAACCAGTTTGCTGAATCGTAACCTTCGATTTGGGCCACTACTGTCAAAGCATGTTTCCA
TCTTTGGATCTCTTCCTTTCTTTTTCCTCTACAAGTTTTTCTGAAAACCTTCCCAAAATAGCTCTTCTGCTTCTTTATATCACTGG
GATTGACTTGAAAGAAAATGGGTATCACCGTGTGACCAAACTCTTCTCGGTAATTGATGATCTCAAAAAGCTCGTTCAAGCACCAT
GTAGACGAAGCATAGTTATTCGAGAGCAAGACAATTACAATCCTCGATCCTCTAATAGCCTCTATGAGCGCAGGACCGATTGACTT
ACTTCTCTGTATATCACTGTCAATGAATAGGTCGATTCCTTTGCTCGTGAAATCCTTGAGAACGTGGCTGAGAAAGTTTGTGCGGA
CATCTGCCCCGTGGAAGCTTGGGAAGACCTGATGTATCCGATTTCGAGGCAAAGAAGACGGAGGAGCCAACATAGTTAAAGAAGAA
GAAGAAGAAGAAGAAGAAGCCATTGTTTTGTTTTCTTGATGAGATCTGGATTTTTTGATGAAAAAAACTGTAGCCAAGAGCGCCAA
GCAGCATATTGCAGTAGCAACAAAATTGGCAAGGGAAAAATAAGAATCCATTAGTACGATGAACAGAGGATCAAGATCGCAGAGGC
TTTTAGCAACACGGAACTAATCC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002870848 predicted protein [Arabidopsis lyrata subsp. lyrata] | 649 | 9e-066 |
| XP_002870850 predicted protein [Arabidopsis lyrata subsp. lyrata] | 644 | 3e-065 |
| XP_002870846 predicted protein [Arabidopsis lyrata subsp. lyrata] | 639 | 1e-064 |
| NP_001031980 Toll-Interleukin-Resistance domain-containing protein [Arabidopsis thaliana] | 623 | 9e-063 |
| XP_002870849 predicted protein [Arabidopsis lyrata subsp. lyrata] | 615 | 8e-062 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O82500 Putative disease resistance protein At4g11170 | 394 | 2e-037 |
| Q40392 TMV resistance protein N | 260 | 5e-022 |
| Q9FHE9 Protein PHLOEM PROTEIN 2-LIKE A8 | 211 | 3e-016 |
| Q9C5Q9 Protein PHLOEM PROTEIN 2-LIKE A5 | 177 | 2e-012 |
| Q9FHE8 Protein PHLOEM PROTEIN 2-LIKE A6 | 177 | 2e-012 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9FKM8 Putative uncharacterized protein | 623 | 7e-063 |
| Q8H1N6 At3g04210/T6K12_17 | 580 | 6e-058 |
| Q93ZI0 AT3g04210/T6K12_17 | 580 | 6e-058 |
| Q9LSV1 Disease resistance protein RPP1-WsB | 568 | 2e-056 |
| Q9ZSN6 Disease resistance protein RPP1-WsA | 537 | 6e-053 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G38344.1 transmembrane receptor | 623 | 4e-065 |
| AT3G04210.1 disease resistance protein (TIR-NBS class), putative | 580 | 4e-060 |
| AT3G25510.1 disease resistance protein (TIR-NBS-LRR class), putative | 568 | 1e-058 |
| AT3G04220.1 disease resistance protein (TIR-NBS-LRR class), putative | 525 | 9e-054 |
| AT3G44480.1 RPP1 (recognition of peronospora parasitica 1); LRR domain binding | 520 | 4e-053 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
