RadishBase

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Information for unigene UN02987

FASTA Sequence

Unigene ID: UN02987	Length: 1360	SSR
GGGATCAGTCGGTTGAGAGATAGAGAGGAAAGGCGTTGTTACCTTACCTTACCTCACTCAATTTCGGCTCTCCCCAAAACCAAACC CTAATAATCAAGTTTCCATCTTTTTTTTTCTTTTTTTAATTCATGACCCTTCTTCTTCTCGCGTTTTGAGAGAAAGTCAAGCCCTT TAATTGACTTGTTGCACTTGCGCCAAATTTCTGAAAATCTGGTGTGTCCGTAAATGCCTTGTTGTGGTCTGGCTTGAATCTTTTCG GAAAAAAAATCGTTGATGGGTTCGGGAAATCACGAATTAGTGGATGTTAGTTCAGACGAGGAGGTCGATGCGCGTGTCGACGACTT CGATTGGCTTAACGATCTGTCTTCGGACAGCACCTGTAGTCGAGGTGCTTTCTGAGGTTAAAGTAGGCAGCGTTGATTCTCTGTAT CGGAAACCAAAAGCTCTTGAGGATGAAGACGATGACGATTGTGTGATTCTCGATGGTGATCCTGACAAGACAACCAAGACTGATGC TGTTGGCGATGATGATTATAAATTAGCCAAGGATGACGATGATGATGATGATGAGGTTCTTGTAGTGGGGCAAAAGGGTGAGATTG CGTGTCGAGATTTCCCTCATCCCAGACATTCCTGTGCTAAGTACTCATTCGACTCAACTTCACATGAGAAATACTGCGACATGTGT CACTGTTATGTGTGTGACATCCCTGCTCCATGTCCATACTGGTGTCTCGCTGTCTCCAGCATAGAGCATTGTCATGCTAATGACAA AGAGAAGATATGGAGGAATCAACGAGAGTTCTTCAGGACCGGAATCATGCCCACCGAACCATCTCCAAAACCTACTACCACTACAC CCTTACCAGTTCCTGGGACAGTGACCCGCCAGATCTCACCCTCTCCTATTCCAAATATCATCAGGTTGCACCAAAACCCTATGCCA GGGAACATGACTGGGATCCGACCTTGCTCATCATCTAATCTGCCAAACGTCACAGGCAGGCATAGAGTTCCGCACAATCATGGGTT GCAGTCATTGATCAGTGGTCGCAGCAGCAACGTCATCCGAAAGGATAGAAGTTCTTATGTTCCTAACTCGAGGTCGCGAGTAGCCT ATCCAGGAGCTCGGTATGGTGCACGAAATGGTAGCAACAGCAAGGTGGGTCCATATACCAATGCTAAAGTTTCACAATCCACCAAC CATATCTCTTCCGTAGTGGCACCACCACCACCACCACCAATAACAGCAGAAATGTACGCTCACTACACAACGCAGTCGTCAGTCAT GTCCCTGCTTATAGTGCAGCAGCAGTGACCGGTCTCAGAGCATGTTGTTACACTCAACATCAGCAGAGCA

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_179621 RPM1 interacting protein 13 [Arabidopsis thaliana]	707	4e-072
XP_002886273 hypothetical protein ARALYDRAFT_319882 [Arabidopsis lyrata subsp. lyrata]	695	1e-070
XP_002869484 hypothetical protein ARALYDRAFT_328829 [Arabidopsis lyrata subsp. lyrata]	425	2e-039
XP_002268946 PREDICTED: hypothetical protein [Vitis vinifera]	403	7e-037
CBI37208 unnamed protein product [Vitis vinifera]	403	7e-037

Swiss-Prot top hits (Blast detail)	Score	e value
B4K982 Lateral signaling target protein 2 homolog	139	1e-007

TrEMBL top hits (Blast detail)	Score	e value
Q9SK71 At2g20310	707	3e-072
A2Z8B2 Putative uncharacterized protein	391	1e-035
Q337M3 Expressed protein	391	1e-035
Q9AV84 Putative uncharacterized protein	391	1e-035
Q08AA3 At4g28690	384	8e-035

Arabidopsis top hits (Blast detail)	Score	e value
AT2G20310.1 RIN13 (RPM1 INTERACTING PROTEIN 13)	707	2e-074
AT4G28690.1 LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: RIN13 (RPM1 INTERACTING PROTEIN 13) (TAIR:AT2G20310.1); Has 370 Blast hits to 352 proteins in 105 species: Archae - 0; Bacteria - 10; Metazoa - 143; Fungi - 82; Plants - 80; Viruses - 3; Other Eukaryotes - 52 (source: NCBI BLink).	427	4e-042
AT4G27660.1 unknown protein	284	2e-025
AT5G54150.1 unknown protein	207	1e-016
AT5G54148.1 unknown protein	181	1e-013

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


9	1			50%


7	1			50%

Unigene Members	Member information