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Information for unigene UN03162

FASTA Sequence
Unigene ID: UN03162Length: 1162 SSR 
GGTCAAAAGCTTCAATGACCAATCTCCAAATGATGAAAGATCCATGATACAGAGAGGTGATACAAAAGAGTGGTTGCAAGTGAAAG
AACATAGATATATACATGTACAGACCTGATTCCAAAAAAAAATCAAAATAAAACAGACAAAAGTAAAATCATTTGTATAGATATCA
TTATCACAAACAATGCATTATATCCAAAAACACCAGTCGTTTTTTTTTTACCTCTGGACCCCCCAAGTTTCCTGATCAAATGTTTG
TGTGGGGTCATGAATATGCAAATCTGTTTCTTCTAGACTTCCTCACGGTCCAAGTTGCTGCTCTTGAGGATGTTGTATTTGCAGAG
TGGGCAAGTGGCGTTTATGTACAGCCATTTGTCTACGCATGAGCAGTGGAAATGATGGCCACAAGGAAGTTCCCTTAGTTCGGTTC
CATCTTCATATGCAGAGAGACAGATGCAACATTCTGCATCCTCCTGCAGAATGGTATGTTCAAGGGGTGAATCTGTACCACACTCG
GTCATTATCCCCTCTTGGGCTTCATCACCAGCGTGTTTGTTGACACAGCCAAGTTTTCGAAACTTGAATTTGGTGAGCTGCTCAAT
GTCTTCTTTTGACGCCCCTTCCTGATCGGCAACAGCGTACAAAACTGCGATGATGCATGGAAGGCAGCAGCAAACAGCAATTCCAA
TAACGCAGGCCAACGCAAAACAAAAGACAACAAAGAACACATCGAAACCCTGGAAGACGATAGACAACCAGTAAATACGCGGGGAT
TCTTCCGCTAACTCTTGGCCACCAGCAGATACCCAGTAGAACCCAATGATCCACCAAATAAATGAGAACATTGTGTTGGCAGATTC
AAGATGCTTCGCAACACTGCTGCTGCCTTCACTCTCCAGCTGCTCATCTGAGTTCCTCCTTGAAACCAAAGCATCTTCCTCCATCG
AGGAAGAAGATGAAGAAGAAGAAGAAGAACGCAACGACGTAGTCCTCCTATTAGTCCTCATCCGGTTCCTCCTCCTATACTCAAAA
CACACACAAACCATATGCAACACGCACTGCAACGCATACCCAAACAGCCAAACCCTAAGCGGCATGATCGGATGCTCATTCCTGCT
CATCACCAGAACAGCCGCAGCCACCGAGACAAACGCCAGATTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002889965 protein binding protein [Arabidopsis lyrata subsp. lyrata]13436e-146
NP_172736 E3 ubiquitin-protein ligase [Arabidopsis thaliana]13212e-143
NP_001031032 E3 ubiquitin-protein ligase [Arabidopsis thaliana]13212e-143
XP_002887973 zinc finger family protein [Arabidopsis lyrata subsp. lyrata]11374e-122
NP_564810 E3 ubiquitin-protein ligase [Arabidopsis thaliana]11312e-121

Swiss-Prot top hits (Blast detail)Scoree value
Q9LN71 E3 ubiquitin-protein ligase At1g1276013576e-149
Q8LDB8 E3 ubiquitin-protein ligase At1g6317011533e-125
Q93Z92 E3 ubiquitin-protein ligase At4g1168010054e-108
Q5NCP0 RING finger protein 431604e-010
Q8VEM1 Goliath homolog1561e-009

TrEMBL top hits (Blast detail)Scoree value
B9DH70 AT1G12760 protein13211e-143
B9RC56 Cleavage and polyadenylation specificity factor, putative10962e-117
Q01JP3 OSIGBa0139P06.5 protein9832e-104
Q7XRX2 OSJNBb0032E06.5 protein9832e-104
B4F8A2 Putative uncharacterized protein9771e-103

Arabidopsis top hits (Blast detail)Scoree value
AT1G12760.1 protein binding / ubiquitin-protein ligase/ zinc ion binding13584e-150
AT1G12760.2 protein binding / ubiquitin-protein ligase/ zinc ion binding13584e-150
AT1G63170.1 zinc finger (C3HC4-type RING finger) family protein11532e-126
AT4G11680.1 zinc finger (C3HC4-type RING finger) family protein10053e-109
AT3G61180.1 zinc finger (C3HC4-type RING finger) family protein8217e-088

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
102  100%

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