Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN03215

FASTA Sequence
Unigene ID: UN03215Length: 818 SSR 
GGGAGATCGACGAGACGAGACGAGTCTTTTGCGTTCTTCTCATCTTCTCCTTCACATTTCACATTGATTAAAGCTAAAGCTTGGCT
GCTTCCTTTCTCTCTCACTCTCTCTCTCTCTCTCACTTTTCTCGCCGCGGATCCTCTCTTCCTTTGCGTCCATTTTCTCCGAGATA
TTTTCCCCTACACGAGCGTCTCGAGATTGATTGGCGAATGATGAGATGAGGAATCGGTAAAATCAAAAATCAAAAAATCAAATAAA
TTAATAATAATAATAATAATCTGCAATGTCGTCGACTTCTTTGCAAACGATTGGGGCCATAAAGGCTTATCATCATCAAGCTCAGC
ATTTGGTTAACAACTATCTCTTGGCTGATCCTTTTATTCCTTACACTTCTATTCTCACCGGCATGTTCCTCTGCAAAGTGGTCTAT
GATCTTTGTCACTTCATCAGCAACTCCCATTCCAAGACCTATATCATCCTCACCAAGATTCAACGTATCGAATGGAACAACCGTGG
TATCTCGACGGTTCATGCTATCTTTATCTCCGCAATGTCCCTCTACTTTGTCTTCTGGTCCGATCTCTTTTCTGATAGGTGGCACA
ATGACCTTGTTGTCTTCCGGAGCTCACGTCTTTCCTCTCTTGGTTTAGGGTTATCCATTGGTTACTTCATTGCTGATCTTGGCATG
ATCTTCTGGAAATATCCTTCTTTGGGTGGACTTGAGTATATTGTGCATCACTCGCTCTCGGGGGTAGCTGTTGCCTACTCCTTGTT
TTCTGGGGAAGGACAGTTGTATACATACATGGTCCTCATCTCCG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_564377 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein [Arabidopsis thaliana]9097e-096
XP_002893848 hypothetical protein ARALYDRAFT_473644 [Arabidopsis lyrata subsp. lyrata]9062e-095
BAH19941 AT1G31300 [Arabidopsis thaliana]8953e-094
AAF24587 T19E23.9 [Arabidopsis thaliana]7717e-080
XP_002263050 PREDICTED: hypothetical protein [Vitis vinifera]6524e-066

Swiss-Prot top hits (Blast detail)Scoree value
Q6PGS5 Transmembrane protein 56-B1342e-007
Q5XIY2 Transmembrane protein 56-B1253e-006
Q8CGF5 Transmembrane protein 561226e-006

TrEMBL top hits (Blast detail)Scoree value
Q93Z82 At1g31300/T19E23_129095e-096
B9DGS4 AT1G31300 protein8952e-094
Q9SHF1 T19E23.97715e-080
B9ICG7 Predicted protein6335e-064
B9NA48 Predicted protein6291e-063

Arabidopsis top hits (Blast detail)Scoree value
AT1G31300.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19645.2); Has 478 Blast hits to 478 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 269; Fungi - 98; Plants - 80; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).9093e-098
AT1G31300.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19645.2); Has 478 Blast hits to 478 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 269; Fungi - 98; Plants - 80; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).9093e-098
AT4G19645.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G31300.2); Has 401 Blast hits to 401 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 186; Fungi - 102; Plants - 84; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).6225e-065
AT4G19645.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G31300.2); Has 401 Blast hits to 401 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 186; Fungi - 102; Plants - 84; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).6225e-065
AT4G10360.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G31300.2); Has 453 Blast hits to 451 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 225; Fungi - 97; Plants - 91; Viruses - 3; Other Eukaryotes - 37 (source: NCBI BLink).3717e-036

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
111  50%
 
101  50%

Unigene MembersMember information