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Information for unigene UN03223
| FASTA Sequence |
| Unigene ID: UN03223 | Length: 928 |
SSR | | GGAGAGACCATGGAAACCCTTTTCAGAGTCTCACTTCGTCTTCTTCCAGTTTCCGCCGCCGTGACGTGTCGCGTAATCCGTTTCCC
CGTTTCAATACCCTCTTCCTCACACTTTCTGAACCGTAGTAGTAGTAGTCTGTATAAGTTTTCTTCTTCCTCCTCCTCCTCCTCAG
TGAAGACAAATGCTGGTTGGCTGTTGGGTCTGGGGGACAAGACGAAGAAGAAGCAAACGAATTTACCGGATATCGTAGCGGCTGGA
GACCCGGTTCTGCACGAGAAGGCCCGAGAGGTTGACCCGGAAGAAATCGGGTCGGAGCGTATTCAGAGGATAATTGATGATATGGT
CAAAGTCATGAGATTGGCTCCTGGTGTTGGCCTTGCTGCTCCTCAGATTGGTATCCCCTTAAGAATTATTGTTTTGGAAGATACAA
GAGAGTATATAAGTTACGCACCGAAGGAGGAGGTTCTTGCTCAACAAAGACGTCCTTTTGATCTCTTGGTAATGGTGAATCCGGAG
CTGAAGGGGGTTAGCAACAAGAAAGCTCTCTTCTTCGAAGGATGTCTGAGTGTTGATGGATTCAGAGCTGTGGTGGAGAGATACCT
TGAAGTGGAAGTCACAGGCTATGATCGTCAAGGGAAACGGATTCAAGTGAATGCTTCGGGCTGGCAAGCGAGGATTTTGCAGCACG
AGTGCGATCATTTGGATGGTAATCTTTATGTGGATAAGATGATACCACGCACTTTCAGGACAGTCGACAACTTGGACTTGCCTCTC
GCAGATGGCTGTCCTAAACTCGGTCCTCGATGACCCAGACAGATTCTTTGTTATGTAATGTTTGATTCTTTTACTTTCTTAAATTT
AAAAGTTTGGCCAGAGATTGTCGAACCCATGTCGGTTTGGTTTATACAGAAAAAAATAAATATTGTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002890102 hypothetical protein ARALYDRAFT_334826 [Arabidopsis lyrata subsp. lyrata] | 1140 | 1e-122 |
| NP_563974 peptide deformylase 1A [Arabidopsis thaliana] | 1127 | 4e-121 |
| AAD39667 Simalar to gi|4377403 Polypeptide Deformylase from Chlamydia pneumoniae genome gb|AE001687 [Arabidopsis thaliana] | 1097 | 1e-117 |
| XP_002298107 peptide deformylase [Populus trichocarpa] | 909 | 9e-096 |
| XP_002517604 polypeptide deformylase, putative [Ricinus communis] | 909 | 9e-096 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9FV53 Peptide deformylase 1A, chloroplastic | 1127 | 2e-122 |
| Q9FUZ0 Peptide deformylase 1A, chloroplastic | 826 | 2e-087 |
| B6RGY0 Peptide deformylase 1A, chloroplastic | 748 | 2e-078 |
| Q7NJV3 Peptide deformylase 1 | 390 | 6e-037 |
| Q9HBH1 Peptide deformylase, mitochondrial | 349 | 3e-032 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9GKW9 Peptide deformylase | 909 | 6e-096 |
| B9RV35 Polypeptide deformylase, putative | 909 | 6e-096 |
| Q2HVV7 Formylmethionine deformylase | 768 | 1e-079 |
| B4FRX0 Putative uncharacterized protein | 740 | 2e-076 |
| C5X3Z9 Putative uncharacterized protein Sb02g041130 | 739 | 3e-076 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G15390.1 PDF1A (PEPTIDE DEFORMYLASE 1A); peptide deformylase | 1128 | 1e-123 |
| AT5G14660.1 PDF1B (PEPTIDE DEFORMYLASE 1B); iron ion binding / peptide deformylase | 165 | 6e-012 |
| AT5G14660.2 PDF1B (PEPTIDE DEFORMYLASE 1B); iron ion binding / peptide deformylase | 165 | 6e-012 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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