Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN03256

FASTA Sequence
Unigene ID: UN03256Length: 1410 SSR 
GAAACAATTTTTTGCCAACTGAAGATATTATTACTAATTGTACAATTAAAAGAACTAAAATAAAAGTTAAAACTCTTTTGCCTCAA
GCAGCCAAAGAGATATCAATGCGAGAACCACTAAACAAAATATGAAATGTATAAATAAATAAAGACAAAAAAAAGGTTTCTTCTAA
CTTTCAACGGTTCTTCCGAATCTTTCTCAGCCTCTCTCGCTCTTCTTCCGCTGCGATCAGCTGCGCTTCCTTTTCATCTTCCTCCC
TTGCAATTCTCGCACTTCGTCTCTCTTCCTTCATTATATCGTCAAAGTTGGCTTCCATGTTTCTGTCATCATCGTCACGCCCAGCA
TAACGATTGGTATTGAACATTTGTCTATCATGCTTAATGCCTTAGCATCCTCTGACATTATTGCAGGCTTCTTCTTCTTCTTCAAA
GGCCTCCGATCATCATGTATGTCACGCTGTGGAGGTCTCTTGGCTGCCGGTTTAGTCATCATCTGTGGCAAAGTTTATTTTACAAA
TTAGTGCCTACGCTAATAATTTAAAGACAACGATGTCAAAAAATCATTTTATACCTGGTGTCTTGAGGTAGGCACTGGTTGTTTTG
GGATCATCCGGGAGGTGGTAGGGTTTACTTTTCTCTGTTCTCCCAGCCGTTGCCTAGGATCTGATGACATTGGTCTCGACGAGGAC
GGTGGTCTCTGAGCACTTTGAAGAGAACTCTTTCCTGCCGACATGGAGGGCTTTCTCTCCAACGAAGGCTTAGAAGGCAAAGGTCT
TGTTGCTGTGGACCCTGACCGACCAGGACCAACTCCATTACTGCTGCTCATCTGCCTCCTATGATCCACAGGCACCTTTGCAGGAG
CTGATCTGGAACTTGGCTGGCCATTCCGATTAGCTGAGTGGCTATTCATCGTTGAACCTGGTGGTCTCATGGGTGCTTGACGGTTT
GTCGAGGAACCAGGTCTCTGGCTTCCAGAGGATGAAGCCCTTTGTTGCATTTGGTTTCCAGAGGAAACCGGTCTTGAATGTTGCAT
TTGGCTACTGCCAGAGGAAGCCGGTCTTGATTTCTGCATTTGGCTGCTGCCAGATGAAGCTGGTCTCCCCGAGATAGATCTCGACT
GCATTTGGCTTCCTGAAGAAGTCGTCATCGTCGGTCTTGAATTTTGTATTTGGCTGCTGCCTGAAGAAGCCGTTGGTCTTGAATGA
TTCATTTGGCTGCCAGAGGAAGCCGGTCTAGAATGACCATTCGCGGGTCTCTTATCCTCACGAGGTGGACCTTGAGCAACTCTACC
ATTGATAGCTGGTGATTGTTTGGGTCTCGCTGATGATTGAGCAGATCGAGCCTCTTGAATATCAGCAAAAAGCCCGAATTAGGAAA
GGAGCCACTTCGAGACAAAGGTTCCTTCTTGGGA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002264780 PREDICTED: hypothetical protein [Vitis vinifera]2381e-017
CBI18616 unnamed protein product [Vitis vinifera]2381e-017
XP_002265425 PREDICTED: hypothetical protein [Vitis vinifera]2325e-017
XP_001568166 proteophosphoglycan ppg4 [Leishmania braziliensis MHOM/BR/75/M2904]2192e-015
XP_001568167 proteophosphoglycan ppg4 [Leishmania braziliensis MHOM/BR/75/M2904]2182e-015

Swiss-Prot top hits (Blast detail)Scoree value
Q17RH7 Putative protein TPRXL2062e-015
Q77Z83 Immediate-early protein 21642e-010
O94317 Uncharacterized serine-rich protein C215.131571e-009
O96615 Sericin-2 (Fragment)1561e-009
P02845 Vitellogenin-21524e-009

TrEMBL top hits (Blast detail)Scoree value
A4HM87 Proteophosphoglycan ppg42262e-016
A4HM86 Proteophosphoglycan ppg42191e-015
Q3EBW3 Putative uncharacterized protein At2g227201992e-013
Q3EBW4 Putative uncharacterized protein At2g22720.21992e-013

Arabidopsis top hits (Blast detail)Scoree value
AT2G22720.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chromatin SPT2 (InterPro:IPR013256); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37860.1); Has 34422 Blast hits to 21553 proteins in 958 species: Archae - 9; Bacteria - 2953; Metazoa - 16492; Fungi - 6405; Plants - 1061; Viruses - 320; Other Eukaryotes - 7182 (source: NCBI BLink).9096e-098
AT2G22720.3 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chromatin SPT2 (InterPro:IPR013256); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37860.1); Has 34349 Blast hits to 21327 proteins in 952 species: Archae - 9; Bacteria - 3053; Metazoa - 16365; Fungi - 6337; Plants - 1046; Viruses - 325; Other Eukaryotes - 7214 (source: NCBI BLink).9096e-098
AT2G22720.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chromatin SPT2 (InterPro:IPR013256); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37860.1); Has 18810 Blast hits to 9739 proteins in 609 species: Archae - 9; Bacteria - 1424; Metazoa - 8282; Fungi - 2696; Plants - 486; Viruses - 222; Other Eukaryotes - 5691 (source: NCBI BLink).7932e-084
AT4G37860.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Chromatin SPT2 (InterPro:IPR013256); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G22720.3); Has 543 Blast hits to 488 proteins in 97 species: Archae - 0; Bacteria - 20; Metazoa - 186; Fungi - 63; Plants - 52; Viruses - 1; Other Eukaryotes - 221 (source: NCBI BLink).1703e-012

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
202  67%
 
111  33%

Unigene MembersMember information