Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN03270

FASTA Sequence
Unigene ID: UN03270Length: 959 SSR 
CTAACTTACAATGGCGGAAGAGCACAAACACGAGGAATCGATCATGGAGAAGATCGCTGAGAAGATCCACGGTCACGACAACTCTT
CTTCTTCAGATTCAGATGACGAGAAGAAAGAGTCGTCTATCAAAACGAAGATCTATCGCCTCTTCGGACGAGAAAAGCCTGTCCAC
AAGGTCTTCGGCGGCGTAAAACCTGCTGACATATTCCTATGGAGGAACAAGAAGGTATCAGGAGGAGTGTTGGGTGCTGCAACTCT
CTCCTGGATCTTATTCGAGTTGCTTCAGTACAACCTCCTCACTCTCTTCGGCCACATCTCGATTCTCGCTCTCGCTGTGTTGTTCT
TGTGGTCTAGTGCTACTACCTTCATTCACAAGACACCTCCTCATATCCCTGAAGTTCACATCCCCGAGGAAGTTGTTCTCCAGCTT
GCTTCTGGACTAAGGATTGAGATCAATCGTGGTTTTACTCTTCTTAGGAACATTGCATTAGGGAGAGATCTCAAGAAGTTCCTTAT
GGTTGTTGCTGGCTTGTGGGTTTTGTCCAAAGTTGGTAGCTCATGCAACTTCTTGACCTTGATCTATATCGCAACTGTTCTTCTCT
TCACCGTTCCCGTGCTTTACGAAAAGTATGATGATAAAGTAGATGACTTTGCTGAAAAGGCGATGAAGGAGATCAAGAAGCAATAC
GCTGTGCTCGATGAGAAGGTTTTGAGCAAGGTGATGAGCAAAATCCCCAGAGGAGCCTTCAAGAAGAAGGATTAGAAGAGTGTGTA
AGTTTCTCTCATCATCATCATCATCTGAGTCTTCCAGGTTGATATATAAATCTCGAAGCATTGTTTTTTCTTACTTGTAATGGAAG
CTGTGTTGGTTAATAAACCCTTTTAGTCTCTCAAATATTTGCTTTGTGGGTTTTATTCGGGGGTTTAACCAAATTTTATACAACCA
TATTAAATTTGAG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002887921 reticulon family protein [Arabidopsis lyrata subsp. lyrata]11454e-123
NP_176592 reticulon-like protein B3 [Arabidopsis thaliana]11222e-120
BAH57206 AT1G64090 [Arabidopsis thaliana]10227e-109
XP_002870630 VIRB2-interacting protein 3 [Arabidopsis lyrata subsp. lyrata]9842e-104
NP_198975 reticulon-like protein B4 [Arabidopsis thaliana]9789e-104

Swiss-Prot top hits (Blast detail)Scoree value
Q9SH59 Reticulon-like protein B311228e-122
Q9FFS0 Reticulon-like protein B49883e-106
Q9SUT9 Reticulon-like protein B28404e-089
Q9SUR3 Reticulon-like protein B18387e-089
O82352 Reticulon-like protein B58208e-087

TrEMBL top hits (Blast detail)Scoree value
C0Z3C7 AT1G64090 protein10225e-109
B3TLN1 24 kDa seed maturation protein8782e-092
A9PAK3 Predicted protein8684e-091
B2WS91 Reticulon family protein8594e-090
B9GX32 Predicted protein8594e-090

Arabidopsis top hits (Blast detail)Scoree value
AT1G64090.1 reticulon family protein (RTNLB3)11235e-123
AT5G41600.1 BTI3 (VIRB2-INTERACTING PROTEIN 3)9882e-107
AT4G11220.1 BTI2 (VIRB2-INTERACTING PROTEIN 2)8441e-090
AT4G23630.1 BTI1 (VIRB2-INTERACTING PROTEIN 1)8432e-090
AT2G46170.1 reticulon family protein (RTNLB5)8207e-088

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
71  17%
 
113  50%
 
102  33%

Unigene MembersMember information