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Information for unigene UN03349
| FASTA Sequence |
| Unigene ID: UN03349 | Length: 1000 |
SSR | | CGGCACGAGGAATCTGTGTTGCCTTTCCTTGTACCACACGATCCCTAACTCTCATCTACTCTAATAACACGCCCCTTTAACAGCAA
TAGAGAAGCAGAAGAAGATAGCAGCTGAGGTTAGAGAGAGAGGAGAGAGGGTTTTCATTTCATAGTAAGCCCTAATTCAATTGATC
TTATCTCTCTCTCTCTCTCTCTGGTCATCATGGCTTCTTCGGTCTGCGTCAACGATGCTTTAACCGACGACGAGCTGAGATGGATA
CTGTCGAGGCTAGACGCAGACAAGGACAAGGAAGTGTTCGGTCTCGTCTGCAAGCGGTGGCTGTATCTGCAGAGCACCGACCGGAA
GAAGCTGGCGGCGCGTGCTGGTCCCCACATGCTTGGTCGCCTCGCCTCCAGGTTCACTCGAATCGTGGAGCTGGACTTGTCTCAGT
CAGTCTCGAGGTCGTTTTATCCAGGTGTCACTGACTCTGATCTCACCGTCATCGCCGAGGGGTTCAAGTGCCTCAGAGTTCTTAAT
CTCCATAACTGTAAAGGTATTACAGATACTGGTTTAGCCTCAATTGGACGATGTCTCTCTCTTCTGCAGTTTCTTGATGTATCATA
CTGTAGAAAGCTCTCGGACAAAGGACTATCAGCAGTTGCAGAAGGCTGCCGTGATCTAAGGGCATTGCATCTAGCTGGCTGTCGCT
TCATCACCGACGAATCTCTGATATCGCTCTCCGAGAGATGCCGTGACCTGGAAGCTCTGGGACTCCAAGGCTGCACCAATATAACT
GATTCAGGACTCGCTGATCTTGTGAAGGGATGCAGAAAGATCAAAGCTTTGGATATCAATAAATGCAGCAACGTGGGAGACGCTGG
AGTTTCCACCGTGGCCAAAGCTTGTGGGTCTTCTCTCAAGACGCTCAAGTTGCTGGACTGTTACAAAGTTGGGGACGAGTCTATAT
CCTCCCTTGCTCGGTTTCTGCAAGAATCTGGAAACGTTGATTATCGGTGGATGC
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| GenBank top hits (Blast detail) | Score | e value |
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| XP_002872053 protein binding protein [Arabidopsis lyrata subsp. lyrata] | 1219 | 1e-131 |
| NP_197725 leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily protein [Arabidopsis thaliana] | 1209 | 2e-130 |
| XP_002513122 glucose regulated repressor protein, putative [Ricinus communis] | 1024 | 4e-109 |
| ABI64127 putative F-box and leucine-rich repeat protein [Jatropha curcas] | 968 | 1e-102 |
| XP_002276047 PREDICTED: hypothetical protein [Vitis vinifera] | 959 | 2e-101 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8BH16 F-box/LRR-repeat protein 2 | 276 | 1e-023 |
| Q9UKC9 F-box/LRR-repeat protein 2 | 274 | 2e-023 |
| Q5R3Z8 F-box/LRR-repeat protein 2 | 274 | 2e-023 |
| A6H779 F-box/LRR-repeat protein 2 | 271 | 4e-023 |
| Q58DG6 F-box/LRR-repeat protein 20 | 253 | 5e-021 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9FMW7 AT5g23340/MKD15_20 | 1209 | 1e-130 |
| B9RGH0 Glucose regulated repressor protein, putative | 1024 | 3e-109 |
| Q09HM7 Putative F-box and leucine-rich repeat protein | 968 | 1e-102 |
| B9H5N9 Predicted protein | 959 | 1e-101 |
| B6TQ04 Putative uncharacterized protein | 718 | 9e-074 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G23340.1 INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: F-box family protein (FBL4) (TAIR:AT4G15475.1); Has 9095 Blast hits to 3545 proteins in 210 species: Archae - 0; Bacteria - 454; Metazoa - 4575; Fungi - 774; Plants - 2118; Viruses - 15; Other Eukaryotes - 1159 (source: NCBI BLink). | 1209 | 6e-133 |
| AT2G25490.1 EBF1 (EIN3-BINDING F BOX PROTEIN 1); protein binding / ubiquitin-protein ligase | 251 | 8e-022 |
| AT4G15475.1 F-box family protein (FBL4) | 251 | 8e-022 |
| AT1G77000.1 SKP2B; ubiquitin-protein ligase | 237 | 3e-020 |
| AT5G27920.1 F-box family protein | 236 | 4e-020 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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