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Information for unigene UN03357
FASTA Sequence |
Unigene ID: UN03357 | Length: 592 |
SSR | | GGGCTCGATCTCGTCTCTCGACTGCTCCTCAAAGACCGAGATTTAGCTGGTTTAAGACTAATCTTCGGAGAATTTGTTGAGCTGCA
AGCGAATATGAGTAGGCCAATGGAAGAGGATACCAACCAGGGAAAGACGGAGGAGGAGGAGTTCAACACGGGACCCCTTTCTGTTC
TGATGATGAGTGTCAAGAACAACACTCAGGTGCTCATCAATTGCCGCAACAACAGGAAACTCCTTGGTCGTGTTAGAGCTTTTGAC
AGGCACTGCAACATGGTCCTGGAAAACGTCAGAGAAATGTGGACCGAGGTACCTAAAACTGGGAAAGGAAAGAAGAAAGCTCTTCC
TGTTAACAGAGATCGCTTCATCAGCAAGATGTTTCTCCGTGGTGACTCTGTCATTATCGTCCTCAGGAACCCCAAGTGAGAGAGAG
AGAGATGTCGCTGTTTGTACTTGTTTCTTCTCTTCAAATTCTAATTGTTGCATCAACGGAGATAATCTTTAAGTATGAGTCTTCAA
TCTAGTCTTGCCCTTGTATTTTACACTTGTGTTTTCGCCTATCTCTTATGAGTAAGATGCAGCGTTGAGTAAAAAA
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GenBank top hits (Blast detail) | Score | e value |
NP_566107 small nuclear ribonucleoprotein D2 [Arabidopsis thaliana] | 564 | 3e-056 |
XP_002878480 predicted protein [Arabidopsis lyrata subsp. lyrata] | 558 | 2e-055 |
XP_002880318 hypothetical protein ARALYDRAFT_483945 [Arabidopsis lyrata subsp. lyrata] | 546 | 4e-054 |
NP_850477 small nuclear ribonucleoprotein D2 [Arabidopsis thaliana] | 542 | 1e-053 |
ACF06449 small nuclear ribonucleoprotein-like protein [Elaeis guineensis] | 520 | 4e-051 |
Swiss-Prot top hits (Blast detail) | Score | e value |
Q3SZF8 Small nuclear ribonucleoprotein Sm D2 | 455 | 8e-045 |
P62316 Small nuclear ribonucleoprotein Sm D2 | 455 | 8e-045 |
P62317 Small nuclear ribonucleoprotein Sm D2 | 455 | 8e-045 |
Q9VI10 Probable small nuclear ribonucleoprotein Sm D2 | 449 | 4e-044 |
Q18786 Probable small nuclear ribonucleoprotein Sm D2 | 418 | 1e-040 |
TrEMBL top hits (Blast detail) | Score | e value |
Q8RUH0 Putative small nuclear ribonucleoprotein D2 | 564 | 2e-056 |
Q8L3W7 Small nuclear ribonucleoprotein-like protein | 546 | 3e-054 |
O22247 At2g47640 | 542 | 8e-054 |
B3TLL8 Small nuclear ribonucleoprotein-like protein | 520 | 3e-051 |
C6T0Y9 Putative uncharacterized protein | 518 | 5e-051 |
Arabidopsis top hits (Blast detail) | Score | e value |
AT2G47640.1 small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative | 565 | 1e-058 |
AT2G47640.4 small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative | 565 | 1e-058 |
AT3G62840.1 FUNCTIONS IN: molecular_function unknown; LOCATED IN: small nucleolar ribonucleoprotein complex, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein, core (InterPro:IPR001163), Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core (InterPro:IPR006649), Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative (TAIR:AT2G47640.4); Has 535 Blast hits to 535 proteins in 164 species: Archae - 2; Bacteria - 0; Metazoa - 239; Fungi - 109; Plants - 78; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink). | 565 | 1e-058 |
AT2G47640.2 small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative | 548 | 1e-056 |
AT2G47640.3 small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative | 548 | 1e-056 |
EST library breakdown for ESTs in the assembly |
Library |
ESTs | Percentage of ESTs in assembly |
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