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Information for unigene UN03452
| FASTA Sequence |
| Unigene ID: UN03452 | Length: 1670 |
SSR | | GATGACTAAAGAAACTTAATATTATTATTCTTTGGTTTAAGAAAATACAGAAAGATAACCAACTAGCTGATTTTTCTCAGCCATTC
TGAAGTGGTATACAAAGATTGATCATTAAGAAAAAAAGAAGAGCAAAACTGCATCCTAGGCTCTAGGATTAAGGAAGAAGAAACAA
AAGAAAACATACTGTGGGAAGAAAAAAACATTACAGGAGGAACGCAAACACCATTATCTCTAATTGCTTACAAATCTAAATGTGGG
GATCACCAAAACTGTTCCAGCCATTGGGCTAACGTTAACATCTTCTTCATTTGTGTCTTGCAGCTGGACCTGTCAATCGCCTTGTA
TCACCGTTCCCGTTTATGGAAAAGTGCACAGGCTGCCTTTCTTGTCCTACCGACAAAACCCAACTTGAGTTGAGTCTCCGAGCAAA
CTCCTCTACTTCCCTATCAAGCATTTCTTTCAAAGCTGGATCAATTTCATCATCTATATAACCATCTTCAAACTCAGCCTTCTTTG
AAAAAATATCATCTTCCATACTATGTAAGTTGGATACCCTTCCCAAGCTAGACGAAGAAGTCTCCTCAACACTTCGTTGCTTGGAA
TGCAAATTATGTGAACCTTATTGGAACTTTGCATGTTCCATTTTTATGCTCCTTCCTTTTCTTGTTCTTCTTTTTGCTCTTGGAAG
TATTGACCACTTTGTGATCTCTGCCATTAATAAACGACAAAAGGTCATACACAGAACGCTCGTCCACACGTTCTTCAACCTCTATA
CTCTTAAGTTTAGCTCTTTCTTTCAACTCCTTTCTTTTCTTAGCATACAATCTATTTAAGAGTCGAATACGTGGATCATCCATCGT
GTTCTTCAGAGGCTCCAACTTCTCCTCCTCAGTAAGATCATCAGGCAAATGAAATATTTCACGAATCTCCTCAGGGGATTTGCCCT
CAATAATCCGAGCAAGGGCACGACTAGTAAGATCAACCAAAGGCTTCAACTGTAAACTGTCAGCAGCTGAGGTCAACTCGCATAGC
CGCTTTGTATCCATCCGCATGAATTTCTCATCATAAACTTTACGTTCCTTATTAGAACGTCCAGGTAGTTGATGGAATCTGCAGTA
ATCAAAAATCAAGCTTAACATGGGAGGATTGACTTTATGGGGAAGAGAGATTGCAGAGTTCTTAGAAGATCCAGCACCCTTGTGCA
GAACTTGGTGACATATCATGGGACAGAACATGGCAACCTCTTGTTCCACTTGTTGGATTGATCCATCAGACGTCTCAAGCCATATA
TAGGATTTCATCATATCTGGTTTAATGATGGCCATATCACTTTCCGACATTGATTGGAAGACTTTTAGTTAGTCTTGAGCGATTAA
TATCTTTATTACAGTACTGCCAAGCTTTGAACGCTTATGGCACTTCCCGCAATACAAAGTATATATTTGCGTTGCCTTTTGAAGCT
TGTCTCAACTCTGCAACTGGGACGCCAAAAGGTTTCCACGTCAATGAGCATTGAGCTGAAGCAGTCAGAGTGTCTAGAAACTTCAG
ACCAAACTTACAACCGGAGGAGGTAATGAGTGGTGGCGGTGAAGGAGAGAGAGAGAAGTGAATCTGGCGGAGGAGAGAACGGCGAC
GACGGCGGTAGAACAGACCAAAGAGACGGGAGATCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_567113 SKP1-like protein 21 [Arabidopsis thaliana] | 1084 | 1e-115 |
| NP_001118876 SKP1-like protein 21 [Arabidopsis thaliana] | 1084 | 1e-115 |
| XP_002878380 hypothetical protein ARALYDRAFT_486615 [Arabidopsis lyrata subsp. lyrata] | 1080 | 3e-115 |
| NP_566058 SKP1-like protein 20 [Arabidopsis thaliana] | 1020 | 3e-108 |
| NP_001078065 SKP1-like protein 20 [Arabidopsis thaliana] | 1020 | 3e-108 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8LF97 SKP1-like protein 21 | 1084 | 4e-117 |
| A8MQG7 SKP1-like protein 20 | 1020 | 1e-109 |
| O49484 SKP1-like protein 11 | 183 | 1e-012 |
| P52285 SCF ubiquitin ligase complex protein SKP1a | 180 | 3e-012 |
| O81057 SKP1-like protein 14 | 178 | 5e-012 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q2HTK9 SKP1 component | 968 | 2e-102 |
| B9GQA2 Predicted protein | 933 | 2e-098 |
| B9RDT2 Ubiquitin-protein ligase, putative | 923 | 3e-097 |
| B9I8K5 Predicted protein (Fragment) | 911 | 8e-096 |
| B9RIW2 Ubiquitin-protein ligase, putative | 898 | 3e-094 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G61415.1 ASK21 (ARABIDOPSIS SKP1-LIKE 21); protein binding / ubiquitin-protein ligase | 1084 | 4e-118 |
| AT3G61415.2 ASK21 (ARABIDOPSIS SKP1-LIKE 21); protein binding / ubiquitin-protein ligase | 1084 | 4e-118 |
| AT2G45950.1 ASK20 (ARABIDOPSIS SKP1-LIKE 20); protein binding / ubiquitin-protein ligase | 1020 | 1e-110 |
| AT2G45950.2 ASK20 (ARABIDOPSIS SKP1-LIKE 20); protein binding / ubiquitin-protein ligase | 1020 | 1e-110 |
| AT4G34210.1 ASK11 (ARABIDOPSIS SKP1-LIKE 11); protein binding / ubiquitin-protein ligase | 183 | 1e-013 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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