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Information for unigene UN03552
| FASTA Sequence |
| Unigene ID: UN03552 | Length: 685 |
SSR | | GGAAGGAGAAACCAAACGAGAAGAAGCATCATCTCTCTCTCTCTACTGACTGTTACGCCGTGAAATGACGAGATCACCCCTCTTCG
TCTCCGTCCTCCTCCTCCTCGTCTCCGCCGCAACTTTCATCACTCGCGCATCGGCGGAGATAAAGTCTCTCACGATCTCCGACGAC
GACAGACCGATGATCCTCTTCGAGAAGTTCGGATTCACACGATCTGGCCACGTCAGCGTCTCCGTCTCCTCCGTATCGGCGTATAA
GTATCTGTGGGTGAGCAATGCGGCTGAGGAGATTGCGAGTCTGGCGTTTTACATGGTGATGTTCTATATGTTTAGGCCGGTTGAGA
AGAATGAGTATTTTGTTTTGGATGAGGAAGATGAAGAAGCAGCGGAGCTGGCATTGAAGGAAGATGATTTTGAACTCTGAAGAATC
AGATCAAGAACTTTCATTGACTATACAAAGCCGTGACTGTGTGAGGAGGTTTGCTTTCTCTTTTCTTCTTTTTTCTATTGTTACTT
TTGACTTCAAAGTAGTTTATTTGCAAAGGGGAATAACCTTGTATGTAGTAGTACTCTCTTACATTGTAAAAGCTTGTTTGTCCCTA
AGACTGTTTTTGCTTGTAAGAAAGGTTAGTGCATCTGTTGTTCAGTGTGTGTATTGCCGTTAATTGAACCGCTTTATCCACTC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002862156 hypothetical protein ARALYDRAFT_920168 [Arabidopsis lyrata subsp. lyrata] | 289 | 4e-024 |
| XP_002882624 hypothetical protein ARALYDRAFT_478277 [Arabidopsis lyrata subsp. lyrata] | 289 | 4e-024 |
| NP_187568 lung seven transmembrane receptor-like protein [Arabidopsis thaliana] | 287 | 6e-024 |
| XP_002308488 predicted protein [Populus trichocarpa] | 268 | 1e-021 |
| XP_002525014 lung seven transmembrane receptor, putative [Ricinus communis] | 266 | 2e-021 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9C5T6 At3g09570 | 287 | 4e-024 |
| B9HCB4 Predicted protein | 268 | 7e-022 |
| B9SG95 Lung seven transmembrane receptor, putative | 266 | 1e-021 |
| B9IIW7 Predicted protein (Fragment) | 260 | 6e-021 |
| A5AI92 Putative uncharacterized protein | 254 | 3e-020 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G09570.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G18520.1); Has 385 Blast hits to 385 proteins in 83 species: Archae - 0; Bacteria - 2; Metazoa - 216; Fungi - 12; Plants - 132; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink). | 288 | 2e-026 |
| AT5G18520.1 LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09570.1); Has 385 Blast hits to 381 proteins in 83 species: Archae - 0; Bacteria - 2; Metazoa - 213; Fungi - 14; Plants - 131; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). | 227 | 3e-019 |
| AT5G42090.1 LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09570.1); Has 303 Blast hits to 300 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 180; Fungi - 10; Plants - 90; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink). | 178 | 1e-013 |
| AT5G02630.1 LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G18520.1); Has 344 Blast hits to 343 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 225; Fungi - 2; Plants - 96; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). | 176 | 2e-013 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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