Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN03618

FASTA Sequence
Unigene ID: UN03618Length: 1319 SSR 
GGAGGTTCAGCCAGACTTTCTTCTTGGCTCCTCAAGACAAGGGTTACTTTGTCTTAAACGATGTGTTTCGTTTCCTTGAGGAGAAA
GAGGTGACCAGGTCTGTTGCCATCAAGGACGTTGATGCTCCTGTTGAACCAGAACGTGTTGTTGTTGTTAGTCGTGAGGCTGAGGT
TGAACCAGAGCCAGTTGCTTCTATTGAGGAGGAAGATGTTGACAATGTGGCTGAGGTGTATGATGATCCTTGTGAGAAAGATGAAG
GTGTTGTTGTTGACGTTGAGCCTATTGTTGAGCCTCCTCCAGCTCAGTTAAATCACGGTGAAGTTCTATCAGTGTCTCATGGAGAT
CCTCCTACCTATGCTTCAATCCTCAAACTGATGAGAAGCGGTCCAGCACCACCAACACACGTTGCTGCTCGGAACAAGCCAAGAGC
AGCTCCGGTCAGAACCAACCAGAAGCCAACTCCTCCTCCACCTGCTGAGCATGCAGCAGCTCCCAATGCTTCTTTAGGTCTTGAGA
ATGTTCACAACAGTAGCAATGCTGATGTGGAAGATGATGGACATTCGATTTATGTCCGGAACTTACCTTTTGACACCACGCCAACA
CAGCTTGAAGAGGTGTTCAAGAGCTTTGGTGCTGTCAAGCATGAAGGGATTCAAGTCAGAAGCAATAAGCAGCAAGGTTTCTGTTT
TGGTTTTGTGGAGTTCGAAACGTCTAGTGGAAGGCAGAGTGCGCTTGAGGCCTCACCGATTACAATTGGTGATCGTCAAGTTGTTT
TGGAGGAGAAGAAAACAAACACTCGAGGAGGCAACAACGGAGGTGGTAGGGGAAGGTACTTTGGAGGAAGAGGAAGCTTCAGGAAC
GAGAGTTTCAAAGGAGGACGTGGTGTTGGAGGAGGAAGAGGAGGGTATGGAAGAGGCGAATATTCAGGTAGACCAAAGAGTTCAAA
CCCTCGGAGTGGCGGAGAAGGTTATCAGAGAGTTCCACAAAACGGTGGCAGTGGAAGGGGAGGAGGAGGAGGACGTGGTGGTCCTC
GCGGTGGTGGTGTTTCATCTTAGACTTTGCATCTAATGGGGGCACCACCTGCATAAGAGAGTAGTTTGTTATTTTTGTTTTTGCAT
CGTTTTTTTCTTTTCTTTTGGCCTTACTACTTGAGTTTAGTTTGATTTTCAAGTCGTTTTGGCTGTTTTTGGTGGGTTTAGTTTCT
CCATATTCTTGCTTTCTTTTTTTGTATTTTCACCCTTTTAAATCCTTCTTTGGAAACTTCTTCATAAACATTCAATTTCATAAGAA
AGCCATTATAGAGTTGTGTTCTTTGATGC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_200906 nuclear transport factor 2 and RNA recognition motif domain-containing protein [Arabidopsis thaliana]13518e-147
NP_851235 nuclear transport factor 2 and RNA recognition motif domain-containing protein [Arabidopsis thaliana]13348e-145
AAM62628 ras-GTPase-activating protein SH3-domain binding protein-like [Arabidopsis thaliana]13348e-145
XP_002864713 nuclear transport factor 2 family protein [Arabidopsis lyrata subsp. lyrata]13321e-144
ABR16060 unknown [Picea sitchensis]5882e-058

Swiss-Prot top hits (Blast detail)Scoree value
Q03251 Glycine-rich RNA-binding protein 81669e-011
Q55CW0 rRNA 2'-O-methyltransferase fibrillarin1552e-009
P15646 rRNA 2'-O-methyltransferase fibrillarin1506e-009
P56959 RNA-binding protein FUS1452e-008
P10495 Glycine-rich cell wall structural protein 1.01443e-008

TrEMBL top hits (Blast detail)Scoree value
Q9FME2 AT5g60980/MSL3_10013516e-147
Q8LEI7 Ras-GTPase-activating protein SH3-domain binding protein-like13345e-145
B8LK80 Putative uncharacterized protein5882e-058
A2XSG1 Putative uncharacterized protein5173e-050
C6TCM3 Putative uncharacterized protein5173e-050

Arabidopsis top hits (Blast detail)Scoree value
AT5G60980.2 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein13513e-149
AT5G60980.1 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein13343e-147
AT3G25150.1 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein3853e-037
AT1G13730.1 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein3746e-036
AT1G69250.1 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein2662e-023

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
121  25%
 
111  25%
 
92  50%

Unigene MembersMember information