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Information for unigene UN03628

FASTA Sequence
Unigene ID: UN03628Length: 795 SSR 
GGACGAGACGAGTCTTTTGTGTTCTTCTCATCTTCTTCTTTTCTTCTCCTTCACATTTCACATTGATTAAAGCTAAAACTTGGCTG
CTTCCTTTCTCTCACTCTCTCTCTCTCTCACTTTTCTCGCCGCGGATCCTCTCTTCCTTTGCGTCCATTTTCTACGGGACTTTCCC
CTACACGAGATTATTAGCGTCTCGAGATTGATTGGCGAATGATGATGAGATGAGGAATCGGTAAAATCAAAAATCAAAAATCGAAT
AAAATAATAATAATAATCTCTGCAATGTCGTCGACTTCTTTGCAAACGATTGGGGCCATAAAGGCTTATCATCATCAAGCTCAGCA
TTTGGTTAACAACTATCTCTTGGCTGATCCTTTTATTCCTTACACCTCTATTCTCACCGGCATGTTCCTCTGCAAAGTGGTCTATG
ATCTTTGTCACTTCATCAGCAACTCCCATTCCAAGACCTATATCATCCTCACCAAGATTCAACGTATCGAATGGAACAACCGTGGT
ATCTCGACGGTTCATGCTATCTTTATCTCCGCAATGTCCCTCTACTTTGTCTTCTGGTCCGATCTCTTTTCTGATAGGTGGCACAA
TGATCTTGTTGTCTTCCGGAGCTCACGTCTTTCCTCTCTTGGTTTAGGGTTATCCATTGGTTACTTCATTGCTGATCTTGGCATGA
TCTTCTGGAAATATCCTTCTTTGGGTGGACTTGAGTATATTGTGCATCACTCGCTATCGGGGGTAGCTGTTGCCTACTCCTTGTTT
TCTGGGGAGGACAGTTGTATA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_564377 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein [Arabidopsis thaliana]8542e-089
XP_002893848 hypothetical protein ARALYDRAFT_473644 [Arabidopsis lyrata subsp. lyrata]8513e-089
BAH19941 AT1G31300 [Arabidopsis thaliana]8406e-088
AAF24587 T19E23.9 [Arabidopsis thaliana]7653e-079
XP_002263050 PREDICTED: hypothetical protein [Vitis vinifera]5971e-059

Swiss-Prot top hits (Blast detail)Scoree value
Q6PGS5 Transmembrane protein 56-B1298e-007
Q5XIY2 Transmembrane protein 56-B1234e-006
Q8CGF5 Transmembrane protein 561225e-006

TrEMBL top hits (Blast detail)Scoree value
Q93Z82 At1g31300/T19E23_128541e-089
B9DGS4 AT1G31300 protein8405e-088
Q9SHF1 T19E23.97652e-079
B9ICG7 Predicted protein5923e-059
B9NA48 Predicted protein5896e-059

Arabidopsis top hits (Blast detail)Scoree value
AT1G31300.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19645.2); Has 478 Blast hits to 478 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 269; Fungi - 98; Plants - 80; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).8547e-092
AT1G31300.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19645.2); Has 478 Blast hits to 478 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 269; Fungi - 98; Plants - 80; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).8547e-092
AT4G19645.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G31300.2); Has 401 Blast hits to 401 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 186; Fungi - 102; Plants - 84; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).5733e-059
AT4G19645.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G31300.2); Has 401 Blast hits to 401 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 186; Fungi - 102; Plants - 84; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).5733e-059
AT4G10360.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G31300.2); Has 453 Blast hits to 451 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 225; Fungi - 97; Plants - 91; Viruses - 3; Other Eukaryotes - 37 (source: NCBI BLink).3412e-032

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
112  100%

Unigene MembersMember information