RadishBase

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Information for unigene UN03641

FASTA Sequence

Unigene ID: UN03641	Length: 1212	SSR
GGGACCAACAAAGAGAGAGAGAGAGGAAGGGATATCTGTTGATGGCGTCGTCTTACTTGTCATGGTAGACGGAGTTTGACATATAC TAAAAAGATGGGAGGAGGGAATTCTAAAGAAGATTGGAGGCAAGAGCCGCCATCAACAACAACATGGGCTTCTCATCAAAGTTAGC CTCCTTTGACGAGGATAACTTAATCCCTTGTTTTGGTTTTGGTGACGCATCAACTCATGATCAAGACGTGTTTAGTTTCTATCCAG AGGGTCGATGCTCTAATGGATTTGAGCAAGTTTTGGCTCGCTACAGAGAAGTTGTCCCTCACCTTAAGCTCGCAGGACCGACATCT TTTGCACCCATCATTGAAATGGCGATGACAGTTGTTGAGCAGAGTAGCGGCCAATATCATGTGTTAGTGATCATAGCCGATGGACA GGTAACAAGAAGTGTGGATACGGAACATGGGCAGTTAAGTCCCCAGGAACAGAGGACTGTTGATGCAATTGTGAAAGCAAGTACTC TTTCTTTGTCAATAGTGTTAGTCGGGGTGGGGGATGGACCATGGGACATGATGCAGGAATTTGATGATAACATACCTTCCCGAGGT TTTGATGACTTTCAATTTGTGAACTTCACTGAGATCATGTCAAAGAACAAAGAGCAGTCTCGAAAGGAGACGGAGTTCGCACTCTC TGCTCTCATGGAGATTCCTCCACAGTACAAAGCCACCATCGAGCTTGGCCTTTTAGGGCGAAGAAACGGGAGTATCCCAGAGAGAA TCCCACTTCCACCTCCGGCGGTACTGCAGACTGGAGCAACATTCTTCAAGCCGTCAGCAATACCGAGTTATGAACCGAGTGTACCT ACTTTTCCTTTTCCGATGGAGAGCAAGAATATGACCAGCAGTGTGGATGACAACCAGCTATGCCCGATATGCCTGAGTAATCCTAA AAACATGGCCTTTGGTTGCGGCCATCAGACATGTTGTGAATGCGGTCCAGGCCTTAAGGTGTGTCCTATTTGTCGTGCACCCATCC AGACCAGAATTAAGCTCTACTAATGCACCAACTCTAGGCTCCATCCTCTTCAAATATATATTTCACAATTTTCTTGTTATAAAAAA AACAAAATGTTCTTTTGTTCTTTGATTGAATTCAGAAACTTGGCTGTTTTGTTCTCTCTTTAGCTACTTTGCTTGGATTGCAAGTT TGATTTTC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002884269 hypothetical protein ARALYDRAFT_896079 [Arabidopsis lyrata subsp. lyrata]	1339	2e-145
NP_186814 E3 ubiquitin-protein ligase RGLG1 [Arabidopsis thaliana]	1298	1e-140
NP_196946 E3 ubiquitin-protein ligase RGLG2 [Arabidopsis thaliana]	1223	5e-132
BAH19894 AT5G14420 [Arabidopsis thaliana]	1223	5e-132
XP_002271885 PREDICTED: hypothetical protein [Vitis vinifera]	1179	6e-127

Swiss-Prot top hits (Blast detail)	Score	e value
Q9SS90 E3 ubiquitin-protein ligase RGLG1	1328	1e-145
Q9LY87 E3 ubiquitin-protein ligase RGLG2	1223	2e-133
Q09221 Copine domain-containing protein 2	233	1e-018
Q8C166 Copine-1	214	2e-016
Q8IYJ1 Copine-9	213	3e-016

TrEMBL top hits (Blast detail)	Score	e value
B9DGM7 AT5G14420 protein	1223	3e-132
B9GIK6 Predicted protein (Fragment)	1159	9e-125
B9SLV5 Copine, putative	1139	2e-122
C6TIU9 Putative uncharacterized protein	1110	4e-119
B7ZYI7 Putative uncharacterized protein	1101	5e-118

Arabidopsis top hits (Blast detail)	Score	e value
AT3G01650.1 RGLG1 (RING domain Ligase1); protein binding / zinc ion binding	1329	1e-146
AT5G14420.1 RGLG2 (RING domain Ligase2); ubiquitin-protein ligase	1224	1e-134
AT5G14420.3 RGLG2 (RING domain Ligase2); ubiquitin-protein ligase	1224	1e-134
AT5G14420.4 RGLG2 (RING domain Ligase2); ubiquitin-protein ligase	1224	1e-134
AT5G14420.2 RGLG2 (RING domain Ligase2); ubiquitin-protein ligase	1224	1e-134

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


11	1			50%


6	1			50%

Unigene Members	Member information