 |
Information for unigene UN03662
| FASTA Sequence |
| Unigene ID: UN03662 | Length: 1009 |
SSR | | GCTTGAGATATCAATCATTAATATAGTGATACAAATTGTCTTTCCAAAATGTACAAATAAAATCATCACTGCTTGAGTCTTCCCCA
GATTATAAACTCTCTGGAAACAAGACTATAATAAAGCTAGAAAACAAGAAGCTTATCACAGATGATGATGATGATGATCATGCAAT
AGAGAAACAAAGAAAGTAAGTACAAACGATACAAAAGTGAAAGATGGAGAGAAAACCATTATCCTGTTATAAAGATTGTTATTACT
GATATGATCAGAATTGGACGTTGCTCTTGAAGCTCTGACCAAACCGCCAATTCGAAGGAACAACGTTGAGAGCTGCCTTGATTCTT
CCATTGCTGAGTTGAACTTTGAAAGAGAGAGATTGGCCATTGAGGTAGGTGTTGCTTTGCCAGTTAGCTCCCCAGTTTCTTGACAT
TGTCTCCCATTTGTTGCTCCTTGAGCCTTTAATCCAAACTTTAGAGATCTCACCAGCTCCTCCTACGTTTGAGATTAGAACCAGCT
CGAAGTAGTTCCTACCGTTCATTGTAAATCTCATCCCTCCGCTTCTTCTTTTGTAGAGGATGGGGACGATTCCAGCTTTGTACTTA
GCAATGGTGAGAAAGGCAGGCTGAGCCATGTCGAAGTGAGGTCTTGGTGGGTTGCACCATCCTCCATCATCACTTGCCTGAGCAAA
GTTTGGTGGACAAAAGTTTGTGGCAGTGATTGTGATTGATCTACCTCTGAGACACCATTGGGGCACTTTGGCTGCGTCGCAGACAA
TCTGGTAACATCCACCACATGACTTGCCGTCATTGAACAGTGCCGTGCTTAATGCTGCAGTGTTTGTTTTGTAACCATCCGTGTAT
AGGTTTCCATAACCACAAGCTCCACCCATTGTACCAGAAGCATCACTTCCACCATAGAAGGTCGCATGAGCTCGTAACCACCCTGC
AGAAACTGAACTGATCTTCATGAAGAACATTGTGTAGAAGATAACTGCGACCAAAAGAGAGAC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002874967 ATEXPA17 [Arabidopsis lyrata subsp. lyrata] | 1249 | 4e-135 |
| NP_192072 putative expansin-A17 [Arabidopsis thaliana] | 1241 | 3e-134 |
| XP_002515144 Alpha-expansin 8 precursor, putative [Ricinus communis] | 1067 | 5e-114 |
| XP_002515146 Alpha-expansin 1 precursor, putative [Ricinus communis] | 1066 | 6e-114 |
| XP_002301463 hypothetical protein POPTRDRAFT_411151 [Populus trichocarpa] | 1054 | 2e-112 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9RN05 Alpha-expansin 8, putative | 1067 | 3e-114 |
| B9RN07 Alpha-expansin 1, putative | 1066 | 4e-114 |
| B9GRV4 Putative uncharacterized protein PtrEXPA19 (Fragment) | 1054 | 1e-112 |
| C6TFL1 Putative uncharacterized protein | 1053 | 1e-112 |
| Q9ZP37 Alpha-expansin | 897 | 2e-094 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G01630.1 ATEXPA17 (ARABIDOPSIS THALIANA EXPANSIN A17) | 1242 | 9e-137 |
| AT1G20190.1 ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11) | 813 | 5e-087 |
| AT5G05290.1 ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2) | 804 | 6e-086 |
| AT2G40610.1 ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8) | 803 | 8e-086 |
| AT5G56320.1 ATEXPA14 (ARABIDOPSIS THALIANA EXPANSIN A14) | 801 | 1e-085 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
