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Information for unigene UN03758
| FASTA Sequence |
| Unigene ID: UN03758 | Length: 1733 |
SSR | SNP | GGTGAACGAAAGAGAGAGAGAGATATGTTGCTTCAGGCGGTACAGAATCGCAATGTTCCGCTGGCTTCCTCCTCCGCCTCATATTC
TCGCCTCCCTCGCTCGAAATTACCACCCGTCGTAGTCTCCGTGGCTCCAATGAAGAAGAAGACGGCGGCAATAATCGTGTGCTCCA
TCTCCCAGGTGTATGGCTACGGAACGGTGGACTACGAGAGAAGGCCGATTATCCAGTGGAATGCAATCTACAAGAAGATATCTCTG
ATGGAGAAGCCGGAGCTGGGTGCCGCCTCCGTCTTGAATCAGTGGGAGAAAGGAGGCCGTAAGCTTACCAAGTGGGAGCTCTGTCG
GGTCGTCAAGGAGCTTCGCAAGTATAAGCGTCCTAACCAAGCTCTTGAGGTGTACGACTGGATGAACCAGCGAGGCGAAAGGTTTC
GGTTGTCTGCAAGTGATGCTGCCATCCAGCTCGACCTCATCGGCAAAGTCCGTGGTATTTCAGACGCCGAAGACTTCTTCCTCACT
CTCCCTGACAACTTTAAGGACCGCAGAGTCTATGGCTCCCTCCTCAATGCCTATGTTCGGGCCAAGTCCAGAGACAAAGCTGAAGC
CCTGATCGACACTATGAGGCAGAAAGGTTACGCCCTTCACCCTCTTCCCTTCAACGTTATGATGACTCTCTACATGAACCTTAGGG
AGTACCACAAAGTTGACGCTATGGTCTTCGAGATGAAGCAGAAAGATATTCGTCTCGACATCTACTCCTACAACATCTGGCTCTCC
TCCTGCTCCTCCGTTGACCAAATGGAGCTTGTCTATCACCAGATGAAATCTGATGCTTCCATCAATCCCAACTGGACCACTTTTAG
CACCATGGCCACCATGTACATTAAGATGGGCGAATCTCTGAAAGCTGAGGATGCTCTGAGGAAGGTTGAGGCCAGGATTACTGGTC
GTAATCGTATCCCTTATCACTACCTCTTGAGCTTGTACGGCAGCCTTGGTAACAAGAAAGAGCTGTTCCGGGTTTGGAATGTCTAC
AAATCTGTTGTACCCAGCATTCCCAATCTGGGATACCATGCTCTCGTCTCCTCCTTGGTGAGGATGGGAGATATTGAAGGTGCCGA
GAAGGTATATGAGGAGTGGCTTCCTGTCAAGTCTTCTTTTGACCCCAGGATACCTAACCTTCTTATGAATGTGTACGTTAAAAACG
ACCAGCTTGACAAGGCTGAAGGGTTGTTCGACCACATGATTGAAATGGGGGGAAAGCCGAGCCCAGGTACTTGGGAGATTCTAGCC
GATGGTCATACCAGAAAGAGGAGTATCACACAGGCTTTGGCTTGTCTGAAACAAGCTTTTTCTGCGCAAGGGTCCAGCAATTGGAG
GCCCAAGGTGTTGGTGCTCTCAGGCTTCTTCAAGCTCTGTGAAGAGGAGTCGGATGTCTCTAGTAAAGAGACCGTTTTGGAATTGT
TGAGGCAATCGGGGCACCTTCAAGACAAATCTTACCAAGCTCTTATTGATGCAGCAGAAGAAAATGATGAGACCGATGTACTTGTT
ACGCAACTGCAAGATGATTTGTAATAAGAGTAAGATAGATTTAGATCTGGCTGTAAAAGAGGAACCTGAATCAAAATGATCCCCTA
AATTACAGTTAGTACTAAAACATGAATGATTTGCTTGCCTTGCGTTGCAATTTAATGTTTGCTCTTTTAATTTGGGCCGGACTGAA
AAGGCCTGCCACT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002892022 pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | 2282 | 1e-254 |
| NP_171717 pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | 2270 | 3e-253 |
| AAM19786 At1g02150/T7I23.8 [Arabidopsis thaliana] | 2268 | 5e-253 |
| XP_002526471 pentatricopeptide repeat-containing protein, putative [Ricinus communis] | 1781 | 2e-196 |
| XP_002327026 predicted protein [Populus trichocarpa] | 1743 | 4e-192 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8LPS6 Pentatricopeptide repeat-containing protein At1g02150 | 2270 | 1e-254 |
| Q9SY07 Pentatricopeptide repeat-containing protein At4g02820, mitochondrial | 678 | 5e-070 |
| O22714 Pentatricopeptide repeat-containing protein At1g60770 | 660 | 7e-068 |
| Q9SKU6 Pentatricopeptide repeat-containing protein At2g20710, mitochondrial | 635 | 5e-065 |
| Q84JR3 Pentatricopeptide repeat-containing protein At4g21705, mitochondrial | 626 | 6e-064 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9SKK8 Pentatricopeptide repeat-containing protein, putative | 1781 | 1e-196 |
| B9MV62 Predicted protein | 1743 | 3e-192 |
| B9GP78 Predicted protein (Fragment) | 1735 | 2e-191 |
| A5C6T5 Putative uncharacterized protein | 1334 | 7e-145 |
| C5YD36 Putative uncharacterized protein Sb06g024190 | 1109 | 9e-119 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G02150.1 pentatricopeptide (PPR) repeat-containing protein | 2271 | 9e-256 |
| AT4G02820.1 pentatricopeptide (PPR) repeat-containing protein | 678 | 5e-071 |
| AT1G60770.1 pentatricopeptide (PPR) repeat-containing protein | 660 | 6e-069 |
| AT2G20710.1 pentatricopeptide (PPR) repeat-containing protein | 635 | 4e-066 |
| AT4G21705.1 pentatricopeptide (PPR) repeat-containing protein | 626 | 5e-065 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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