RadishBase

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Information for unigene UN03776

FASTA Sequence

Unigene ID: UN03776	Length: 1214	SSR
CTGATTTGATATTGTATTTATCACATTAATGTTTAACGAAAAGGTATTTATTCTCATCTCACACATTAATGTTTAAGAACAAGTTT CAATGTAAGCAAGCATTTCAAAGCTTCTTTGGTGGTGCTTGGGTTTCTGCAGCCACCACTACTACTAACGCTTGCTCTTCTTCCTC TTCTTCTATTGGCTGAGGTGGAGATGCTGGCGGAGATGGTGACTTCTCTTCCGGTTGGGTTTGTTCTTGCTGCTTCTCCTCTTCTT CTTCGGATTCTAACTGTACATTCTGCCATTTGTATCTGATGACTACCACGATTATGAACACTGTGAAGAAACGGATCTTGAGACTA GTGAGGTTCCAGAATGCAGTAATCATAGAGCCTGCTACGAACTTCTTGTGTGTGCATATTCCCCATGCTTCAACTATTCTCTTTTG TGCGTTTTCAACTTTTTGGTTAATCTGACTTGCATAACATGAATATAGCTTTGGGACGGTGAAGCTGAGGAAGAAACCTAAAGCAC ATAGCCTCCACAATGTTATGAGGTAACCGTACTCTGCTCTGATTAAACAAAGGGTGCCACTTTGAGTGTCATTGCTGGTTCGCCAG AGAAAAGCTGGCTCGTCTCTGAAATCGCCAAAATTGGTGACTGGAAGCATTCTTCTAGCTACTCGTAACACATCCTCTTCACTCAG TTTAACCTCTCTCCGCTCTGTCTCTTCTGTTACCCTTTGGCGAAGAGAGTGACAAAAACGAAACCCCGAGAAACAAAAGCCCAACA TGAGAGACCGCTGAGAAAACACTAAAGCTGAATCCTTTAGCAAAGCAAGAAGACATGAAATACGAACACCCGAAACCGAACCTAAG TGTCGACTTTGCAACATCTCTCCACATGATTAGATCGTTAATATTCTCTCTAATCCGCTCCAAATCACCTTGACAAACATCTTCAC TTAGATCTGAAGATAGACAAGGAGGAGAAGGCAACAGAGGAACCGAACTCTGTTTCTCCTTCTTAGACCGAACCATCTTCTTATGC TTCCTCGGTTTCGTCCCTTTCTCATCCGTCAACACAACAACAGGCTTCGGCTCCTCCACCACCACCACCACCTCCGATGATCTCCG GAAATTCCTCGGCAAGGCACTACTGAAAAGACCGTTCTGCCCTCCCTTCGTCTTGCACCACCTTGCAGCGCACACTCATACAACAA CCAAAATTCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002869503 hypothetical protein ARALYDRAFT_491927 [Arabidopsis lyrata subsp. lyrata]	729	1e-074
NP_567809 reticulon-like protein B18 [Arabidopsis thaliana]	671	5e-068
AAM63049 unknown [Arabidopsis thaliana]	671	5e-068
BAE99357 hypothetical protein [Arabidopsis thaliana]	671	5e-068
CAA16882 hypothetical protein [Arabidopsis thaliana]	541	6e-053

Swiss-Prot top hits (Blast detail)	Score	e value
Q8LDS3 Reticulon-like protein B18	671	2e-069
Q6DR04 Reticulon-like protein B17	525	2e-052
Q56X72 Reticulon-like protein B21	249	2e-020

TrEMBL top hits (Blast detail)	Score	e value
B9RVU8 Putative uncharacterized protein	432	2e-040
B9HGQ3 Predicted protein	421	3e-039
B9MYE8 Predicted protein	397	2e-036
B9F565 Putative uncharacterized protein	338	1e-029
Q6K5U2 Os02g0302900 protein	336	2e-029

Arabidopsis top hits (Blast detail)	Score	e value
AT4G28430.1 reticulon family protein	675	7e-071
AT2G20590.1 reticulon family protein	525	2e-053
AT2G20590.2 reticulon family protein	343	2e-032
AT5G58000.1 LOCATED IN: endoplasmic reticulum, chloroplast; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: reticulon family protein (TAIR:AT4G28430.1); Has 1047 Blast hits to 1034 proteins in 125 species: Archae - 0; Bacteria - 2; Metazoa - 715; Fungi - 46; Plants - 58; Viruses - 4; Other Eukaryotes - 222 (source: NCBI BLink).	253	6e-022

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


12	3			100%

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