RadishBase

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Information for unigene UN03939

FASTA Sequence

Unigene ID: UN03939	Length: 860		SNP
ATAAATTAATTTAAAATTAAAAACAAATAACAATCAATAACCCCTCAATTATTTTACATTTGCTTTATAAATATTTATATCCGTGC ATGTGTACGGAAAAATCACTAGTAAAACAATAAAACGGCGCCGTAAGCGGTTCAACTAAATAAACCGGACACGTTTTATTTCATTT TTTTTCTCTTATTGAATGAAATTCAACGGTTCTCTTTGCCAAAGCTCTGCAACAATACAAGTAATTTGAGGAAATAGTATGATGCG CCACCTATAGTTGCAAACTTAAGCTCTTCTGGTCCTTCGACCTCTAGAAAATCTCCTTCGTTTGCTCTGTTAAACCCTCCGGTTAA CCATCCTAAGCTTTTGTAACCTTCTCTGTGCAGCTTAGATATCGCCATCAATGACCTGAGTCCTTCACCGCACGCGACAAGCACTT TACTCTTCTTGTCCGGGAAAGCCTCTACAACACGGAGGGTAAACTGGTCATTAAACATGGTGAATCTCTGGCCCGTCCAAAGCCCA ATATATCCCAAATGGATCCACTTCTTCAGCAGCGTGATCGGCCCATTGTCTGGATCCTCCACGAACAGTGGCACGTGTAGTGATCC TTTCACATGTGCCTTTTCTCTTTCCCAAGCTGGCCGCACGTCTAACAGCACGTATCCCTCCGACGATACCAATGTTTTCGCTTCTC TCGGCTCCACCGTCCGGACCTCGCCGGAAGTTACTAGCTGCTGACCGGATACGGCGGAGATCACTGGTAATCTGTACGGTTTTCTG AGGCGTTGGTTTGGTACTAGTGGTGGCTTGTGGATACGGTTTGGTTGAGGAAGAAGAAGTGTCGTCATCTCTCCCTTTTTGTATCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
AAM64600 rhodanese-like family protein [Arabidopsis thaliana]	923	2e-097
XP_002882589 hypothetical protein ARALYDRAFT_478195 [Arabidopsis lyrata subsp. lyrata]	916	1e-096
NP_566337 rhodanese-like domain-containing protein [Arabidopsis thaliana]	901	6e-095
AAL69515 putative rhodanese family protein [Arabidopsis thaliana]	901	6e-095
XP_002265850 PREDICTED: hypothetical protein [Vitis vinifera]	661	4e-067

Swiss-Prot top hits	Score	e value
No hits found

TrEMBL top hits (Blast detail)	Score	e value
Q8LBR6 Rhodanese-like family protein	923	1e-097
Q8RY72 Putative rhodanese family protein (Fragment)	901	4e-095
Q9SR92 Putative rhodanese family protein	901	4e-095
B9SQ21 Putative uncharacterized protein	647	1e-065
A5B641 Putative uncharacterized protein	639	1e-064

Arabidopsis top hits (Blast detail)	Score	e value
AT3G08920.1 rhodanese-like domain-containing protein	902	2e-097
AT4G24750.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: rhodanese-like domain-containing protein (TAIR:AT3G08920.1); Has 222 Blast hits to 222 proteins in 59 species: Archae - 8; Bacteria - 82; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).	282	2e-025
AT2G42220.1 rhodanese-like domain-containing protein	263	2e-023
AT4G27700.1 rhodanese-like domain-containing protein	116	3e-006

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


6	4			29%


8	4			29%


11	6			43%

Unigene Members	Member information