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Information for unigene UN03953

FASTA Sequence
Unigene ID: UN03953Length: 724 SSRSNP
GGAACTCTCTCTGCCTTGGATTCGTGAGAAGCAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTTCAATGGAGT
TAGCTTCCTTTGTCGGTAGAGCTCTGTTCGTTTCCGTATTCCTTCTCTCCGCATGGCAAGAGTTCAATGGGTTTGGGGATGATGGG
GGTCGAGCAGCTAAATCCTTAAGACCAAAGTACAATGCTTTTGTTAGCCACGTGACAACTCATACCGGCCAGCAATTGCCACCGGT
TGATATGAAGATTCTTGTTGCTGCTGCTGTAGCCTTGAAGGGCATTGGTGGACTTTTGTTCGTCTTTGGCAGCTCTCTGGGAGCTT
ATCTCTTGCTTCTGCATCAAGCCGTTGCCACCCCGATTCTGTATGATTTCTACAACTACGATGTTGACAAAAAGGAATTCAGCCAA
CTGTTTTCCAAGTTTACTCAGAGCTTGGCACTCCTTGGGGCACTACTCTTCTTCATTGGAATGAAGAATTCGAGGAGACATGGTAG
GCAACTCCGGAAGAAGGCTCCAAAAGCTAAAGCAAACTGATAAAAAATGATGTTTTCATCGGGTTGTTCAAGCTTTTGTCTGTATT
TTTATTTTTTATTTTGGAAACCATGAGGAGAGGCAAAATCTTTGCTTATTTCCTTGATCTTATTGACAGTTTTTGTAGACACTTTT
TGGTTCTCTAGAGAAAATACTATTTCAATTTCGGAT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002868284 hypothetical protein ARALYDRAFT_915427 [Arabidopsis lyrata subsp. lyrata]7626e-079
NP_193178 HR-like lesion-inducing protein-like protein [Arabidopsis thaliana]7582e-078
XP_002529307 conserved hypothetical protein [Ricinus communis]5923e-059
XP_002284580 PREDICTED: hypothetical protein [Vitis vinifera]5718e-057
AAC49975 ORF; able to induce HR-like lesions [Nicotiana tabacum]5672e-056

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
O23298 AT4g14420/dl3250c7581e-078
B9STI8 Putative uncharacterized protein5922e-059
P93384 Nicotiana tabacum ORF5672e-056
B9H8K2 Predicted protein5294e-052
A9PE25 Putative uncharacterized protein5261e-051

Arabidopsis top hits (Blast detail)Scoree value
AT4G14420.1 lesion inducing protein-related7596e-081
AT1G04340.1 lesion inducing protein-related4334e-043
AT5G43460.1 lesion inducing protein-related4102e-040
AT3G23190.1 lesion inducing protein-related1682e-012
AT3G23180.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: HR-like lesion-inducer (InterPro:IPR008637); BEST Arabidopsis thaliana protein match is: lesion inducing protein-related (TAIR:AT3G23190.1); Has 68 Blast hits to 68 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).1512e-010

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
62  20%
 
94  40%
 
74  40%

Unigene MembersMember information