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Information for unigene UN03973

FASTA Sequence
Unigene ID: UN03973Length: 789 SSR 
GGGTTCACACTCTGCTCTCTGTTTATGTTTATGGAAGTGGCCAAATACAAATAGAAAGAAACAATAATTCTACTTACCCAAGTAGG
AAATAAAATTAGAGAATATGATGATGATGATGACAAAAGCTTCAAAATAAAATACGTTTTGTTTATGAGACGGGGAGCTACAGATT
TATATATAGCTCTCTGAATCATTGCAACTAAACTCTACTCGAGACACCAAGCCCTCCATTATTGCCAGGTCGGATCAATGACGCAG
TACGGTCTCAGTAAGATCTGTTAGGATCCTTTAATCCAAACCCACCGAAGCTGCTCCTTCCACTTGACTGTGAAGAACGGTCTGAA
CCAAATCCACCAAAACCTCCTGATGAACGGTTGTTTGAACCTCCTGAACCAAAGCCCCCACCGTAACTGGAAGAACGGTCTGAACC
ACCGGAATAACGGCTTTCTGAACGATCACCACCATATCTACCACTACCACCACCACCACCGTAACCACCTGAACGACCGCCATAGC
TTGAACTGCGATCCCTCATGCCTCCTCCATAGGATCCACCTGATCGACCACCGCCTATTCCTTCAAACATGCTTCCGCTTCCACGT
TCCACAGGAATGCTAGGAAGCTCAGTGAATTTGCTTCCAACTTCTCTCTCAATCATTTTAACAGCTCTTGATTGCTCCGGACCGTG
GATGAGAATCGCATTTCCTTTCTTTCCAGCACGGCCCGTTCTCCCCGTTCGGTGAACAAACGTCTCAGTGTTATTAGGAAGCTCAT
AATGAATCACCAAAT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_188870 DEAD-box ATP-dependent RNA helicase 9 [Arabidopsis thaliana]5933e-059
CAA09200 RNA helicase [Arabidopsis thaliana]5933e-059
NP_188872 DEAD-box ATP-dependent RNA helicase 53 [Arabidopsis thaliana]5753e-057
XP_002883355 hypothetical protein ARALYDRAFT_479746 [Arabidopsis lyrata subsp. lyrata]5664e-056
XP_002862173 hypothetical protein ARALYDRAFT_333427 [Arabidopsis lyrata subsp. lyrata]5225e-051

Swiss-Prot top hits (Blast detail)Scoree value
Q9LUW6 DEAD-box ATP-dependent RNA helicase 95931e-060
Q9LUW5 DEAD-box ATP-dependent RNA helicase 535752e-058
Q0ILZ4 DEAD-box ATP-dependent RNA helicase 93636e-034
Q0D8N0 DEAD-box ATP-dependent RNA helicase 533062e-027
P35527 Keratin, type I cytoskeletal 92023e-015

TrEMBL top hits (Blast detail)Scoree value
A5AH66 Putative uncharacterized protein4042e-037
C5YRW1 Putative uncharacterized protein Sb08g0211803952e-036
C0P7U9 Putative uncharacterized protein3871e-035
B9S3L5 Dead box ATP-dependent RNA helicase, putative3728e-034
A2ZMM6 Putative uncharacterized protein3701e-033

Arabidopsis top hits (Blast detail)Scoree value
AT3G22310.1 PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1); ATP-dependent helicase/ DNA binding / RNA binding5949e-062
AT3G22330.1 PMH2 (putative mitochondrial RNA helicase 2); ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding5751e-059
AT5G26742.1 emb1138 (embryo defective 1138); ATP binding / ATP-dependent helicase/ RNA binding / helicase/ nucleic acid binding / zinc ion binding1942e-015
AT5G26742.2 emb1138 (embryo defective 1138); ATP binding / ATP-dependent helicase/ RNA binding / helicase/ nucleic acid binding / zinc ion binding1942e-015
AT3G58570.1 DEAD box RNA helicase, putative1843e-014

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
61  50%
 
81  50%

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