Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN03978

FASTA Sequence
Unigene ID: UN03978Length: 1263  SNP
AGGAAAATGTTTTCACACATTACTAATGGTGAATTGGATGCTGTCAAAGAAAAGAGATTCAATAAGTGGTTACAATTACACATGAG
TATGGATCTTGATTCTTGAACAAGAAACATGAAAAACGTTCAATAAGCATTTTTATAGTTTACCGCTACCCTTTGATCTTTTCCAG
AACCTTAATAATCGCCCCAGTGACCAATTCTTTAAGCTTAGCCACATTTTCGCCAACCTCGTTGATTTCGTCAGTAAATCCACTCA
TTTTCTTATTGATTAGTTGCAAGGCAAGTTTGGTGTCTATCTCGCTATCCTCCCCAGCAAAATCCGCGATCTCCAACATCGACGAG
ATCTTTTCTAATAGGTTCTCGACTAAGCTCATTATGGTCGCCATCGCATCTTTATTGACTTCCAAACCTTTCTCCACCTGTTTTGC
TATTTCTTCCTGTTTCTTCAGAATGTCTTCCAGTTTCGGCAAGTAACCAAGGATGACGAATGGTAACAATAAACTTGCACCTATCA
CTAGAGCTTCGCCGTTGTGCGCATTTATAGCCACCTCTATGAGAGCAACACCGATAAACACACATGGGAGAAATACACTCGTAACT
AGAATAAGCATCATTGACTCAGCATATGCCTCATCAATCTTTGTTTTCAGCTTACTCACTTTCTCCAGAAGGGATTCTTGCTCCTT
TTTGACCAAGTCGAACTGAGCCTTTAACTTGTCGCCATCAAAATCTTCTTTCATGTCTTCAAACTTCTTCAGCTCCTCCAATGTTT
TTTCATACCTCTTCTTATTATTTCCGCCATCTTCCGACTCTTTGTCAAAGAGTTCCACTGCGCGTTGAATGTAACCGTCGCCAATT
GATGCTTTGTCGACCAAGTTATCTACAGTGTTGAAAAACTCTAAAGTTTTTAAGGTATCCTCAAAATAGGCCTTCACCAAAGACCT
TAGATCTTCGTTCTCCCACACACCGCCTTCAATACGAATAATGAACTTTGCCACATCTAGGATTGCTTCAAGTAGATACCCGTAGA
CCTCCGCGTATGATGTGATTATGGAATAAGATCCAGTCTTGGCTTGAGCAATGATCGAGTTCAACACTTTTTTGGTCTTTTCTTGA
AGCGAAGAATCAAAGGCTTTGAGCTCTGGGTGTTCTTCACAAGCAGCTTTGTAAGCACTAATTTGTCCTGAGTATACTTCGTGTAA
TGCCATTGATATTACGGATCGGAATCTTGCTCAAGACAAGAGGAAGATGTTTTGGATCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
AAN60266 unknown [Arabidopsis thaliana]5864e-058
NP_566836 uncharacterized protein [Arabidopsis thaliana]5157e-050
AAL16206 AT3g28270/MZF16_5 [Arabidopsis thaliana]5041e-048
NP_189469 uncharacterized protein [Arabidopsis thaliana]4611e-043
AAN60297 unknown [Arabidopsis thaliana]4126e-038

Swiss-Prot top hits (Blast detail)Scoree value
Q9LVR4 UPF0496 protein At5g666605521e-055
Q9LVR3 UPF0496 protein At5g666705342e-053
Q9LHD9 UPF0496 protein At3g282705153e-051
Q9XF11 UPF0496 protein At3g28290/At3g283004615e-045
Q6E240 UPF0496 protein At3g28310/At3g283203981e-037

TrEMBL top hits (Blast detail)Scoree value
B9SGH6 AT14A, putative3587e-032
B9SGH4 AT14A, putative2852e-023
A8MS39 Uncharacterized protein At3g28310.11373e-006

Arabidopsis top hits (Blast detail)Scoree value
AT5G66670.1 unknown protein5342e-054
AT5G66670.2 unknown protein5342e-054
AT3G28270.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: AT14A (TAIR:AT3G28300.1); Has 443 Blast hits to 436 proteins in 133 species: Archae - 26; Bacteria - 121; Metazoa - 105; Fungi - 15; Plants - 94; Viruses - 1; Other Eukaryotes - 81 (source: NCBI BLink).5152e-052
AT3G28270.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: AT14A (TAIR:AT3G28300.1); Has 443 Blast hits to 436 proteins in 133 species: Archae - 26; Bacteria - 121; Metazoa - 105; Fungi - 15; Plants - 94; Viruses - 1; Other Eukaryotes - 81 (source: NCBI BLink).5152e-052
AT3G28300.1 AT14A4615e-046

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
64  27%
 
91  7%
 
124  27%
 
84  27%
 
112  13%

Unigene MembersMember information