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Information for unigene UN04022

FASTA Sequence
Unigene ID: UN04022Length: 1498 SSR 
AATTTGTATGCTTAATTTAAAAATGTCAAGTAATATAAATGAGAGAGTAAATGCTAAAAAAATTGTTATTGCTTGTCAAATGAATA
TAACTCGGTTTCTATGCACAACAGATGCCTCAGCAAATGATATACAAATAATTATGATTCTTTTGTTTGTGCAACTAAGTACTGCT
GCAAATGGCTGTTTCTCTTCTTGTTCTTGAGCTTCCTGAAAGCAGAGGACTCGATCTGCCTCACTCTCTCCCGGCTCACACCCATC
GTCTCACCAATCTCTTGCAACGTCTTCATCCTCCCATCCTCCATCCCAAAACTCCAGCGTATCACCTGCTTCTTCCTCGTACCCAA
CGGGTCCAGTACTTTGTCCAAGTCCTGCCTCATGAACTGCTTCATCAGTATATCCTCTGAGGTTTCCGCTTCAGGGTCTGATATCA
CTTCCGAAGGTTTGAGGTTTAGATTGATCCCGATCTTCTGGTCTAGCGACCTTGGAGGCTTAGGAGCGAGTAGAACCGCCATGAGC
CTCTTCATCGACAACCCAGTAGCCTCTGCAACTTCTTCGTTCTTTGGTTGCATACCTGTTTCACTATACAGTTGCTTTCTTGCCTC
TTTCACACGGTATGTTGCTTCCACCATGTGAAAAGGCAATCTTATCATTCTGGACTGATCAGAGAGAGACTTCCTCACTGCTTGCT
TGATCCACCAATGTGCATAAGTTGAAAATTTAAATCCCTTTGTCGCATCAAACTTCTCTGCTCCCCTCACAAGCCCTCTGCATCCT
TCCTGGACGAGATCTTGGAAGTCCATTCCAGCTCCTTGGTAGTTCTTTGCAATCGAAATGACCAAACGAATGTTGCTTTTAATCAT
TCTGTCCTTGCACTGTGTGCCGTGAGTTATACGTTTTCTTAAAGTCTTTTGATCGACTCCAGCAGCAGAAGCCCACTGTGAAAAGG
TTGGCTGGTGGCCACAACGCTCAGTAAGCTCTGCTTGAAGTCTTTCCAACTTCAGAAGGTCCTGTATGCCTTCAGAAAGCTGTTGT
TCTTCTCTGGCAGTGAGAAGCTTGGAGCTGCTCGTTGTCATTCTCAGATAACGCAAAGGATCATTATGGTCAATCTCCTGTGAAGC
AACACGTTTCTTTCTAGAGCTCGAACCAGTCTTCACAGACTGCATGCCCGATGCAGTTTTCTCTAGCCCTTTAACCCTCCGAGCTT
TCCTTTCGGTTTGGCGTGTAGATCTCACAGCTGAAGTCACCGAAAGAAGCTCCTCCTCCTCCTCCTCCAGAGGCTCAACATCTTGT
TTCTCTGGTGTCAAATCATCAGACGACTCTTTGTTACATTTAGGTGCAGGTGCAGTGGCTCTATCACTCACAACTCCAGCGTCCGA
AACCGCTAGATGCCCCAGTATGCCAGCACGCTCCTTCTCGGTGAACTGGTCCCACTTGGAGCGTTTGTCGGGTGTTGATGATACTG
ATAGTTTCGAGTTGTGAGTGTTTTTGAATAAAGTGC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
CAB83106 sigma factor 2 [Sinapis alba]20785e-231
XP_002889701 hypothetical protein ARALYDRAFT_470915 [Arabidopsis lyrata subsp. lyrata]19101e-211
NP_172330 RNApolymerase sigma subunit 2 [Arabidopsis thaliana]18894e-209
BAC43527 putative plastid RNA polymerase sigma-subunit SIG1 [Arabidopsis thaliana]18733e-207
AAB69385 sigma factor 2 [Arabidopsis thaliana]18724e-207

Swiss-Prot top hits (Blast detail)Scoree value
P26683 RNA polymerase sigma factor rpoD7109e-074
P38023 RNA polymerase sigma factor rpoD16883e-071
Q31ME3 RNA polymerase sigma factor rpoD25631e-056
P77994 RNA polymerase sigma factor rpoD5333e-053
P0A603 RNA polymerase sigma factor rpoD5306e-053

TrEMBL top hits (Blast detail)Scoree value
Q9MTH3 Sigma factor 220783e-231
O22056 At1g0854018893e-209
Q8GWC1 Putative plastid RNA polymerase sigma-subunit SIG118732e-207
O22455 Sigma factor 218723e-207
B9SDA3 RNA polymerase sigma factor rpoD1, putative14762e-161

Arabidopsis top hits (Blast detail)Scoree value
AT1G08540.1 SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor18891e-211
AT2G36990.1 SIGF (RNA POLYMERASE SIGMA-SUBUNIT F); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor6212e-064
AT3G53920.1 SIGC (RNA POLYMERASE SIGMA-SUBUNIT C); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor5252e-053
AT5G13730.1 SIG4 (SIGMA FACTOR 4); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor4607e-046
AT1G64860.1 SIGA (SIGMA FACTOR A); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor4321e-042

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
62  100%

Unigene MembersMember information