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Information for unigene UN04069
| FASTA Sequence |
| Unigene ID: UN04069 | Length: 1382 |
SSR | | GGGATGGGAGAAGAGGGAAGCCACTATCACTTCTCATTCTAACTTCTCCGTTTCATTAATTATTATAAGGCGACTGATCTGATCTA
ATCTTCGGAGAATATGAGCAACGTCACTGGAGACGGCCCTTCCACCGCCGTCGCACTCCCCGGTTCTACAGCAATCCAGAGTTCGC
CTCCGACTGATCGCCCCGTCCGCGTCTACGCCGATGGGATCTACGATCTCTTCCACTTCGGCCACGCTCGATCTCTCGAACAGGCC
AAGAAATCGTTTCCAAACACTTTCCTTCTTGTGGGATGTTGCAACGATGAAACTACGCATAAGTACAAGGGGAGGACTGTGATGAC
TGCTGAAGAGCGATATGAATCACTTCGGCATTGCAAGTGGGTGGATGAAGTCATCCCGGATGCACCATGGGTGATTAACCAAGAGT
TTCTTGACAGTAACCGGATTGATTATGTAGCCCATGATTCCCTTCCTTATGCTGACACCAGCGGAGCTGGAAAGGATGTTTATGAA
TTTGTTAAGAAAGTTGGGAGGTTTAAGGAGACAATGCGAACTGAAGGAATATCAACCTCGGACATAATAATGAGGATTGTGAAAGA
TTACAACCAGTATGTCATGCGTAATCTCGATAGAGGATATTCGAGGGAAGATCTTGGAGTTAGCTTTGTCAAGGAAAAGAGACTTA
GAGTTAATATGAGGTTAAAGAAACTCCAGGAGAGGGTCAAAGAACAACAAGAAAAAGTGGGAGAAAAGATCCAAACTGTAAAATGC
TGCGCAATGAGTGGGTGGAGAATGCTGATAGATGGGTCGCTGGGTTTCTTGAAATATTTGAAGAAGGCTGCCATAAGATGGGAACA
GCAATCAGAGACAGTATCCAAGAGAGGTTAATCAAACAAATCCCGAGAAACAAGCTGGAGAATGGTCAGGATGATGACACAGACGA
TCAATTTTATGAAGAATACTTCGACCATGACATGGGCAGTGACGAGGATGAAGATGAAAAATACTATGACGAGGAGGAAGAAGTAG
AAGAAGAAGAAGAGAAAGAGAAAACCGTTAACACGGATGTAAAAGCCAACACGTAAGAATACTTTGGCTGTCAGAAACCAAAGGTA
AGCGTACTCATGACCACTTTTACTAAACTCCCTTAGTCTCTCACTCTCACTCTCTCTATCTACCTGTAAAATGCATCTACTTAACA
TGTAGTAATATCAATGTTTAGAAAGTGAGGGAGTGTGTGTTTGTCGTTGGTGGAGTTGTTTCATTGTTTTTGACTTTTGTATACAA
ATGTTTCCCCTTTGGATACTTGGTATCTTACTGTATCTTTTCTTTCTATCGTTTTTTTTGTATAACGGGCAAAGTGTTATGAAATA
ATACGG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| BAA09571 CTP:phosphocholine cytidylyltransferase [Brassica napus] | 1122 | 3e-120 |
| BAA09642 CTP:phosphocholine cytidylyltransferase [Brassica napus] | 1121 | 4e-120 |
| XP_002879376 CTP:phosphocholine cytidylyltransferase [Arabidopsis lyrata subsp. lyrata] | 1088 | 3e-116 |
| BAA09644 CTP:phosphocholine cytidylyltransferase [Brassica napus] | 1012 | 2e-107 |
| XP_002323169 predicted protein [Populus trichocarpa] | 966 | 4e-102 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9Y5K3 Choline-phosphate cytidylyltransferase B | 623 | 1e-063 |
| Q811Q9 Choline-phosphate cytidylyltransferase B | 620 | 2e-063 |
| Q9QZC4 Choline-phosphate cytidylyltransferase B | 620 | 2e-063 |
| P49585 Choline-phosphate cytidylyltransferase A | 607 | 7e-062 |
| P19836 Choline-phosphate cytidylyltransferase A | 607 | 7e-062 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q42620 CTP:phosphocholine cytidylyltransferase | 1122 | 2e-120 |
| Q42619 CTP:phosphocholine cytidylyltransferase | 1121 | 3e-120 |
| Q42622 CTP:phosphocholine cytidylyltransferase | 1012 | 1e-107 |
| B9IHA8 Predicted protein | 966 | 3e-102 |
| B9HCE0 Predicted protein | 959 | 2e-101 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G32260.1 cholinephosphate cytidylyltransferase, putative / phosphorylcholine transferase, putative / CTP:phosphocholine cytidylyltransferase, putative | 1073 | 6e-117 |
| AT4G15130.1 catalytic/ choline-phosphate cytidylyltransferase/ nucleotidyltransferase | 879 | 2e-094 |
| AT2G38670.1 PECT1 (PHOSPHORYLETHANOLAMINE CYTIDYLYLTRANSFERASE 1); ethanolamine-phosphate cytidylyltransferase | 272 | 4e-024 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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