Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN04096

FASTA Sequence
Unigene ID: UN04096Length: 1188 SSRSNP
GTAAAACATATTCATTTATTTAACTTAATAGTTGATACAAACTTATTTTACATTCAAGATGAGAGAAAGAGAGAGAGAGGTCACAC
AGGAGCGAGAGATTCAGATTAATTTAACACGCAAGCAACTAAAACACACAATTCGACAGTTGATAGTTAAGAGCTGATCAATTCTT
GGATATAAGAAACATTTCTTTGCTCTCCTTCATTTTCTCAATGTCTCCTTTGATCTTCTCATCAATGGTTATGGTGTCTTCCATGT
CGGCACTGTCCTGTGGCACCAAAGTTCTCATTTGTGAGGAACAAACCATCGAACTAAGCCTCACGACATCAACAACATGGTCAGAT
ATTTCCTGGAGGTTAATCACAGGCGGTTCCAAAACCTTAGTTCCAGGTTTCTTGTATATTAAGTAAAGTATCATCTGAAGCACTCC
GAAGATGAAACCCAAAACATTTGGAAGAGCTATGTTCATGTCTTTACTGAGAAGACCGTAAAAGAACCACATGACAGCCGATAAGG
TGAGGAAGAAGGATAGACTGAATGGCATGAACTCTGCACTCCTGGTTTTAATCACTTTCCTAATGATGCCAAGGGGGGCGACAAAT
ACACATAGAGAGAAGACCATACAAACATATCCGAGGACTTGAACCCGTTTTTCTCCATGAAGCAGAAAGTATGTCAGGAAGAAGAT
AAGGCCGAAGGCAAAAACATCCACAAAGAGGACGAATTTCACCGTTAGAGTCTTTTCCTTTTTAGGAGCATAGAAGAGGTAGAAGG
AGATGTAGAAGATTTGTATGACCAAGGAAACGGTGTTGATAGTGATCATAACCATTACATTCTTCTTGATCATTGCGTAGTATATC
CATAGCATCGCACTGAACAATGCGATCACGTAAGGGATAGACTGATAGCCTTCTGAAGACTTCCTCTTGTAAATCCGAACGAACGT
CGGTATAGGGGCAAGACACACGAAAAAGGAGATGATATTCCCTAGAATGCCAAAGACCGTACGCAAGACGGCTACTGAAACTGCCA
TTTTATTTTTTAATCTCTCTCGAAGTAGTGAAATGGTACTGTAAAGAAAATATTAATAATAGACTCTCCCTCTCTCTTTCTCAAAG
AAACCGAATGCAAGCGAGGAACGTTAAACACTTAGAATCATAATGAGAATCTGTTAAATGTATGATGTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002865823 nodulin MtN3 family protein [Arabidopsis lyrata subsp. lyrata]12567e-136
NP_199892 nodulin MtN3-like protein [Arabidopsis thaliana]12559e-136
XP_002511127 conserved hypothetical protein [Ricinus communis]8078e-084
XP_002321731 predicted protein [Populus trichocarpa]7835e-081
XP_002322281 predicted protein [Populus trichocarpa]7702e-079

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q9LUE3 MtN3-like protein12557e-136
B9RAA2 Putative uncharacterized protein8076e-084
B9IFG7 Predicted protein7834e-081
B9IFG8 Predicted protein7701e-079
B9P656 Predicted protein7646e-079

Arabidopsis top hits (Blast detail)Scoree value
AT5G50790.1 nodulin MtN3 family protein12563e-138
AT4G25010.1 nodulin MtN3 family protein6335e-066
AT3G48740.1 nodulin MtN3 family protein6254e-065
AT5G23660.1 MTN3 (Arabidopsis homolog of Medicago truncatula MTN3)6245e-065
AT5G50800.1 nodulin MtN3 family protein6156e-064

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
102  18%
 
94  36%
 
72  18%
 
62  18%
 
111  9%

Unigene MembersMember information