RadishBase

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Information for unigene UN04097

FASTA Sequence

Unigene ID: UN04097	Length: 1169	SSR
GTGGAAGTTGATAGGCTTGACCAGCTGAAAGCCAGCCGTATGAAGGAGATTGCTTTCAAGAAACAAACTGAGCTTGAGGAGATATA CGGTCGTGCACACGTGGAAACAAGCCCTGAGTCAGCTCGTGAGAGGATCATGTCGCTGATTGATTCTGGAAACGTTGAGCCTACTG AGTTATTGGCAGACATGGATAGTCAGATAGCTAAGGCTAAGGAAGAAGCGTTTAGCAGGAAGGATATTTTGGACCGTGTTGAGAAA TGGATGTCTGCTTGTGAGGAAGAGAGTTGGCTAGAAGACTACAACCGGGATCAGAACAGGTACAGTGCCAGCAGAGGTGCACATTT GAATCTCAAGAGAGCTGAGAAAGCCAGGATTCTTGTCAGCAAGATTCCTGCCATGGTTGACACATTGGTCGCTAAGACCCGAGCTT GGGAAGAGGAGCACAGCATGTCCTTTGCATACGATGGGGTTCCTCTGCTAGCTATGTTAGATGAGTACGGTATGCTTAGGCAAGAA CGAGAAGATGAGAAACGGAGGCTCAGGGAACAAAAGAAGGTTCAAGAACAGCCTCACATAGAGCAAGACACTGCCTTCAGCACCAG GCCAAGCCCTGCAAGACCAGTTAGTGCTAAGAAACCGGTGGGGGCACGAGCTAACAACGGAGGAGCTAACGGAGCACCGAGCAGGC GTTTATCTTTGAATGCAAGCCAGAACGGAAGCAGGTCAATTGCCAAAGGAGGAGGGAGAAGGGAGACTATAGACAGGCCGGCTGCT CCTACAAACTACGTTGCCATTTCGAAAGAGGAAGCTGCTGCTTCATCTCCGGTTTCTGGTGCTGCAGATCATGTTTCTGCTTCGCC CTGAAGATGTTAAAGGCAAACATGTGTAGTTTTCACTCTTGTCTGTTTAGGAAGAGAGAGGGTTGTATGAAAGAAAACACATGAGA GAAGACCAACAAACAAAAAAAGACATTTGAGGAGTAGAATGATGTACTAGAATGTGTATCTGTGTGTGTGTGTGTGTGTGTTTGTT GTTAGTGTTGTTTTTGATAGTTGGTATCATCATGACTTATTGGCAGACATGGATAGTCAAGACAGTTATGGCTTGTTAATCTGCTC TGTTCTATGACTTGTCGTGTTTATAGATGACAACCCCTGCGAGTGTTGTGT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002864385 atmap65-1 [Arabidopsis lyrata subsp. lyrata]	1323	1e-143
NP_200334 microtubule-associated proteins 65-1 [Arabidopsis thaliana]	1321	2e-143
NP_001190542 microtubule-associated proteins 65-1 [Arabidopsis thaliana]	1321	2e-143
NP_567756 microtubule-associated protein 65-2 [Arabidopsis thaliana]	1103	4e-118
XP_002867542 microtubule associated protein family protein [Arabidopsis lyrata subsp. lyrata]	1098	1e-117

Swiss-Prot top hits (Blast detail)	Score	e value
Q9FLP0 65-kDa microtubule-associated protein 1	1321	9e-145
Q8LEG3 65-kDa microtubule-associated protein 2	1103	2e-119
Q9FHM4 65-kDa microtubule-associated protein 3	650	6e-067
Q8L836 65-kDa microtubule-associated protein 7	633	5e-065
Q9SIS3 65-kDa microtubule-associated protein 6	632	7e-065

TrEMBL top hits (Blast detail)	Score	e value
B9SYY2 Protein regulator of cytokinesis, putative	1063	1e-113
A9PBC9 Putative uncharacterized protein	1060	3e-113
B9GJD5 Predicted protein	1060	3e-113
B9I198 Predicted protein	1059	3e-113
A5AW68 Putative uncharacterized protein	1053	2e-112

Arabidopsis top hits (Blast detail)	Score	e value
AT5G55230.1 ATMAP65-1 (MICROTUBULE-ASSOCIATED PROTEINS 65-1); microtubule binding	1322	6e-146
AT4G26760.1 MAP65-2	1103	1e-120
AT5G51600.1 PLE (PLEIADE); microtubule binding	650	5e-068
AT1G14690.1 MAP65-7 (MICROTUBULE-ASSOCIATED PROTEIN 65-7)	633	5e-066
AT1G14690.2 MAP65-7 (MICROTUBULE-ASSOCIATED PROTEIN 65-7)	633	5e-066

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


6	1			33%


9	1			33%


12	1			33%

Unigene Members	Member information