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Information for unigene UN04102
| FASTA Sequence |
| Unigene ID: UN04102 | Length: 1238 |
SSR | | GGAAAATAAGAAATTAGGTTAGTCAATCATCCCCCAATTCTTCTTCCCTCGCGTTCGGTGCCCTGTTCATCTTCCGTCCTGTGGAT
CGTGATCTCACGGTTGAAGCCAACCTTACTGCCTCGGAGTCGCTACCTCTCTCTCTCTCTCCGTCGGAGTCACTACCTCTCTCTCT
CCGTCTTTTCGTCAAACCCATCTCTGATACATCACGCGAGCGCAGCAGGGATTGGTGGAAGCAACGATGGGTGTATCAAACAAATG
ATGGAACTGCAACTACGTCTGAAGATTTAAAGGAGAATCTGAACCAATTCATAAACTCTATTCAGAAGACTTTGGGACTCCTTCAT
CAGTTACGCCTTACTGTCTCTTCTTTCACACCCGCCTTCTCAGCCTCAACTCTCTCGTGTCGGAGCTGAATAGCATGGCTAAGTTG
TCCGAGAAATGCAACATTCAAGTCCCCATGGAAGTTCTTTGTTTGATTGACGATGGAAAGAACCCGGACGAGTTTACAAGCAAGGG
ATGTTATTAATAGCTGCATCAAGTTACAAAAGGCAAAACTGATGCTTTTAAGGATTTGAGAAAACATATTCTGGAGGAGCTTGAAG
AGACTTTCCCTGATGAAGTTGATAAGTATAGAGAGATCCGTGCTGCTTCTGCGGCTGAAGCGAAACGGCAGGCGCAATCTCAAAGT
GTCTTGTTACCCAATGGGGATGCTAAGGTCAAGAACGAGATTCAGAAGCTCTATCATCACCATGGATGCAAAAGGAAAAGGAAAAA
TGGTGGAAGAACTTCCGATGATGGGTGAAAGCTTCACCTCCAGTGAGAGTCTTCCCCTCCTTGCTGCAACCGATCATGAAACCGAT
CATGAGGATGTGGGTGATGCAAAAGTGACCACATCTCTGGGAGAACTTCAGATCGGTGAAAGCTTCACCTCCAATGAGAGTCTTCC
CCTCCTTGCAACAGAACATGCGGAGGAGGTTGTTCTTTTGGATCTCCCCCCCCTTGTTGTTGACAACAATGTGCACATTGATGATG
AGGCTCAGGAGGAGGTGGAGGAAAACGTTTTGCCCGATGTTGGAGCTCACAACATCCGTAACGTCCGAGGAAGGCCTAAGAGGAGA
CCATTCACTGAGCCCCTCTCCCCACGCTCTCAAGCTAGGGCCAATGAGAGGGAAGCCAAGAAAGAGCGCTCAAGAAAGCTGAGAAC
AGAAGAATCAAAATTAAATGTGCCAACCACGATG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_564254 Mediator complex, subunit Med10 [Arabidopsis thaliana] | 433 | 2e-040 |
| NP_973916 Mediator complex, subunit Med10 [Arabidopsis thaliana] | 422 | 4e-039 |
| NP_199006 Mediator complex, subunit Med10 [Arabidopsis thaliana] | 410 | 1e-037 |
| XP_002868569 hypothetical protein ARALYDRAFT_493793 [Arabidopsis lyrata subsp. lyrata] | 403 | 6e-037 |
| XP_002280081 PREDICTED: hypothetical protein [Vitis vinifera] | 398 | 2e-036 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q16G71 Mediator of RNA polymerase II transcription subunit 10 | 156 | 1e-009 |
| Q7Q5R5 Mediator of RNA polymerase II transcription subunit 10 | 154 | 2e-009 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q93WN1 At1g26660/T24P13_4 | 433 | 1e-040 |
| Q3ED58 Putative uncharacterized protein At1g26665.2 | 422 | 3e-039 |
| Q9FHZ2 Genomic DNA, chromosome 5, P1 clone:MJC20 | 410 | 7e-038 |
| B9GK75 Predicted protein | 398 | 2e-036 |
| B9GY35 Predicted protein | 396 | 3e-036 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G26665.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: RNA polymerase II mediator complex protein-related (TAIR:AT5G41910.1); Has 223 Blast hits to 223 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 83; Plants - 24; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | 433 | 8e-043 |
| AT1G26665.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: RNA polymerase II mediator complex protein-related (TAIR:AT5G41910.1); Has 223 Blast hits to 223 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 83; Plants - 24; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | 422 | 1e-041 |
| AT5G41910.1 RNA polymerase II mediator complex protein-related | 410 | 4e-040 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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