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Information for unigene UN04138

FASTA Sequence
Unigene ID: UN04138Length: 1363 SSR 
CAGTGCGTCCCACTGGTTCTCTGCACAGAATATACTATTAAACGCTCCTTCTTCTGTAGATCCTCTAGATGTGAGATCAACATCAT
TCACTAGTGGCTCAAGCAGTGGTGAGAATCAGACAAATATAGTCCATCACCCTGCTTTGACGAGGAATATACACCAGTTTGCTTGG
GATGCTTCTCGAGGAAGCAGTTCTTCGGGTATCGAAATGCCACATTGGGAAACACCAAGAAGCAATCCTCCAGAGCAACCTATGTT
TGCACCTGCAACTGACATTAGAAACCGTGTGCATGATCAATCTATGTGGAGTTTCGCACGTGGGAATCCTGTAGATTCTCCCTTTG
TTTCTCGAGCAGGACCGAGTTCAGCTATTCATGGGCAGCAGCAGCAGCAGCAGCCAAATCCCCCATGGATTCCTCCTCAGAGTGCC
CCAATACATAATCCAACGAGAGCATCAGAACTTTCTCCTTGGTCTTTATTTCCTAGCATTGAATCTCAAACTGCTAGTCATGGTGC
ATCTCTTCCCTTGATGCCCACAGGTCCTTCTCTGTCCTCAAATGAGGCTGCAATGCCATCTAGTTCTAATAGCCGGAGCCATCGCT
CACGGCAAAGAAGATCAGGGTTGTTATCTGAGAGACAGAATGAGCTTCTCCACTTGCGTCACTTAGGGAGGAGCTTAGCTGCTGAC
AGTGATGGAAGGAATCACCTTATCTCTGAGATACGTCAGGTGTTGTCCGCCATGAGAAGAGGAGAAAGTTTACGTATTGAGGATTA
CATGGTGTTGGATCCACTTATCTTCCAGGGTATGACTGAAATGCACGATAGGCATAGGGAAATGCGCCTTGATGTTGACAACATGT
CGTACGAGGAGCTATTGGCACTTGGGGAACGCATAGGGGATGTGAGCACTGGACTAAGCGAAGATGTCATTCTGAAAACAATGAAA
CAGCACAAATGTACATCTTCTTCTCCTGAGTTGCATCAGTACATGGAGCCTTGCTGTATTTGTCAGGAAGAATATGCAGAAGGTGA
TGATCTTGGGACCTTGGAATGTGGCCATGAGTTCCACAAGGACTGTATCAAGCAATGGGTCATGCTCAAGAATCTCTGCCCCATAT
GTAAGACGGTGGCATTAACAACGTGATGGTATACTATCTTGACTACCATCCCGGCTTCCATTCATCATCCTTGTGATGCCAAAAGT
AAAACAAAAAAAAGAAAAAAATCTTAAAGAACTGTTCTATCTATCCCTATCCCTATCTCATATCAAATATTTTAATTGTTATGCTT
GCTCGTTATGTCACTGTTAAAAGAACATTATGACAAAATTCATAACATATCCATGGAGAAAGAATAATTCACT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002883900 zinc finger family protein [Arabidopsis lyrata subsp. lyrata]15202e-166
NP_179155 RING/U-box domain-containing protein [Arabidopsis thaliana]14988e-164
NP_001189530 RING/U-box domain-containing protein [Arabidopsis thaliana]14692e-160
XP_002867137 zinc finger family protein [Arabidopsis lyrata subsp. lyrata]13527e-147
NP_195130 RING/U-box domain-containing protein [Arabidopsis thaliana]13501e-146

Swiss-Prot top hits (Blast detail)Scoree value
Q9LN71 E3 ubiquitin-protein ligase At1g127601542e-009
Q5SPX3 RING finger protein 2151354e-007
Q93Z92 E3 ubiquitin-protein ligase At4g116801336e-007
Q9WTV7 E3 ubiquitin-protein ligase RLIM1328e-007
Q9NVW2 E3 ubiquitin-protein ligase RLIM1311e-006

TrEMBL top hits (Blast detail)Scoree value
Q9ZQF9 Putative RING zinc finger protein14985e-164
O49500 At4g3404013508e-147
A5BQL0 Putative uncharacterized protein8812e-092
B9RYF8 Protein binding protein, putative7924e-082
A5BKN3 Putative uncharacterized protein7566e-078

Arabidopsis top hits (Blast detail)Scoree value
AT2G15530.1 zinc finger (C3HC4-type RING finger) family protein14983e-166
AT2G15530.2 zinc finger (C3HC4-type RING finger) family protein14983e-166
AT2G15530.3 zinc finger (C3HC4-type RING finger) family protein14983e-166
AT4G34040.1 zinc finger (C3HC4-type RING finger) family protein13513e-149
AT1G45180.1 zinc finger (C3HC4-type RING finger) family protein5602e-057

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
211  25%
 
61  25%
 
82  50%

Unigene MembersMember information