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Information for unigene UN04205
| FASTA Sequence |
| Unigene ID: UN04205 | Length: 1468 |
SSR | | CTCACTCTTCTCCGCTGAAGCAGCTTCATCTGTCTCCTTGCTCTTCTTTTTCTTCTTCTCACTCTTGTCTGCTGCTGATTCATCCT
CATCTGTCTCCTTGCTCTTCTTCTTCTTCTTCTTTTCTGACTTTGGCGTTGCTAGCTCTTCCTTATCCTCCTCTTTGTCCTTCTTT
TTCTGCTTCTCTTTCTTCTCAGACTTGGCTTCTTCTTCTTCGTCTTTCCCCTCTGCCTTGTCCTTCTTCTTCTTGGAAGACTTGAC
CTTCTCCTCAACCTCACCTTCAACATCTTTGGTTTTAGCTTTCTTGGTCGACACAGGAGCAGGGCTGTCGCTGCTATCATCACGCT
TATGCTTACGTTTGCTCACTTCTCCATTGTCAGCCTCAACTTCTCCACAACAGCTGCAACTTGTCAGGAGCCGCAGCAGCACCAGC
AGTCATAGCATCTCCACCTGTAGGCAACACAACGTTCCTGCTCCACTCCACAGGCGTCTTCTCATTAGGCTTCCCATGCTTATCCA
ACTTGCCATCAGCAATAAGCTTCTTCTTCATCGAAGCTCTAGGCCCCAACCCCCACTTCCTCGGGTAAGTATCTCTATCCATCACG
ACCCTCTTGATCTTAGCCACCACACCATGGTCACAAGTAGCCATGACAGAGGTCGTCATCTCAGCGATACCAACAGCAATCGCCTC
ACCTTTAGTCGTCATGAGAACAACCTCAGTGCCAACATCGATATCATTCTCGAACCTCAACAGCCCAGGAATCATCAGCTTAGCAC
CGTAGCAGATGGCATTAACAGCAGAGTCCTTGACAACAAGCCTCTTGTAACTCGTCAAGATCACCTCAAGAGGCATAATCACCCTC
CTGAGATAACTCTCGTCCTTGTAATTATCATACATCCACTGAGCATCCATCACATCATGCATAGTAACCATGTTATCATTCTCACC
CAAAATCCCAGACCTAACCCTCCTAAGCTCTTGCATATGTCCACCGACACCAAGAAGCAAACCCAAGTGAACACACATGGTCCTAA
TATAAGTACCCGCCTCACAAGAAACCCAGAACACAACCAAATGCCTGTCGGCGTCATACTCAAGCAACTTACTCTGGTAAATCGTC
CTAATCCTCAGCTGTCTCTTCACAGCAGAGATCAAAGGAGGTCTCTGAAACACAGCTCCGGTGAGAGACTCAAGCGCCCTCGCCAC
TTTCGCCACATCAGGGACAGCAGAGTGAAGACGAGCAACACAAACGTACTCTTTCCCGGCGCCTTGCTGAGACTTCACAAGCCTCG
TGGCTCTGTCGATGCAGACGATGAGGTTACCTGTGACTTTAGGGTCGAGGGTCCCACTGTGTCCTGTCTTCTCGACGCGGAGGATG
CGTTTGATCCAAGCGACGACCTCGTGGGAAGAAGGGTTGGAGGGTTTGTCGAGGTTGATGACTCCGTAACGGATGTAGTCAAGGAG
AGGACC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_191274 H/ACA ribonucleoprotein complex subunit 4 [Arabidopsis thaliana] | 1764 | 1e-194 |
| XP_002878134 hypothetical protein ARALYDRAFT_486159 [Arabidopsis lyrata subsp. lyrata] | 1759 | 5e-194 |
| XP_002270073 PREDICTED: hypothetical protein [Vitis vinifera] | 1679 | 9e-185 |
| XP_002308911 predicted protein [Populus trichocarpa] | 1679 | 9e-185 |
| XP_002323264 predicted protein [Populus trichocarpa] | 1676 | 2e-184 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9LD90 H/ACA ribonucleoprotein complex subunit 4 | 1764 | 5e-196 |
| Q5ZJH9 H/ACA ribonucleoprotein complex subunit 4 | 1376 | 5e-151 |
| P40615 H/ACA ribonucleoprotein complex subunit 4 | 1368 | 4e-150 |
| O60832 H/ACA ribonucleoprotein complex subunit 4 | 1361 | 3e-149 |
| O13473 Centromere/microtubule-binding protein CBF5 | 1358 | 6e-149 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| C0SVF3 Putative uncharacterized protein At3g57150 (Fragment) | 1764 | 8e-195 |
| B9H9F7 Predicted protein | 1679 | 6e-185 |
| B9IHV1 Predicted protein (Fragment) | 1676 | 1e-184 |
| B9SBQ8 Centromere/microtubule binding protein cbf5, putative | 1672 | 4e-184 |
| A2YP23 Putative uncharacterized protein | 1647 | 3e-181 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G57150.1 NAP57 (Arabidopsis thaliana homologue of NAP57); pseudouridine synthase | 1764 | 4e-197 |
| AT1G56660.1 unknown protein | 165 | 1e-011 |
| AT1G56110.1 NOP56 (Arabidopsis homolog of nucleolar protein Nop56) | 162 | 3e-011 |
| AT3G28770.1 unknown protein | 161 | 3e-011 |
| AT5G27120.1 SAR DNA-binding protein, putative | 161 | 3e-011 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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