RadishBase

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Information for unigene UN04219

FASTA Sequence

Unigene ID: UN04219	Length: 1052	SSR
AAAATGACAATTGTTTTTTAAAAAGTTTCACGGAGGGAGCAGTATCTTTAATATCTTTCTTAGATAAGGTAGTTCTGGGAAATTGA AAAAACATCAAAATTCAAAATCATTTTCTCAGGCAAGAACATCGATTAATTTATAGAACCAACAGAAATACACCACAAGAGCATTT AACCAATCAACCTAAAGCAATCTCTCATATTCGAACCACTTTTGAACACGTAACCCGGTCGTTACCACTAAACCAAGTGGTTCCAC TCTGTTATTACTAGTTTGAGCAGCATCCACCTTTCTTCACAGCAGAAACATCTTTACCAAGATCGATCTTGTCTCCTTTCGACGGA ACATTAGCGGATTCGCTCGCAGCTTCCATGGCCTTTCTGCTCACAACGCAGTGAATCTGAGTGAGGACTTCCGCGAAAGCGTTCTC AACATTGGTAGAGTCGAGAGCCGAGGTTTCCATGAAGTAAAGAGACTCTTTCTCAGCGAATGGCTTGGCATCGTCTGTCTGAACAG CGACGAGGTGGCGGAGATCAGATTTGTTCCCCACGAGCATGACTACGATGTTTGGATCGGTGTGGTTTCTTAGCTCTTTGAGCCAC GTCTCCACGTTTTCGAATGTGGAGTGTCGGGTTACATCGTAGACGAGAAGCGCTCCCACGGCTCCTCGGTAGTATGCGCTAGTGAT GGCTCGGCACCTTTCTTGACCAGCAGTATCCCAAATCTGGGCTTTGATGACCTTATCGTCAACATTCAAGCTCCTAGTCGCGAACT CGACTCCGATGGTTGATTTGGACTCGAGGCTGAACTCGTTTTTTGTGAATCGTGAAAGCAGATTGGACTTTCCAACACCAGAGTCA CCGATGAGAACAACCTTGAAAAGGTAATCGTATTCATCGTCTGCTTTGTAACCCGCCATTGAGAGAGAGAGAGAGATCAAAATGTT TTTTGTGCTTTTTTAGAAAAAAAAAAGGTGAAAAACCCTAACGAGATTTACGCCAGGATTTTGTTCTCTAGATCTTTTCGACTTGT ACACAGACAGAGGAACGCCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_199387 Ras-related protein RABA1c [Arabidopsis thaliana]	1051	4e-112
AAM60865 Rab-type small GTP-binding protein-like [Arabidopsis thaliana]	1040	7e-111
NP_193615 RAB GTPase homolog A1D [Arabidopsis thaliana]	950	2e-100
XP_002867975 hypothetical protein ARALYDRAFT_492979 [Arabidopsis lyrata subsp. lyrata]	950	2e-100
ACD56628 putative GTP-binding protein [Gossypium raimondii]	945	7e-100

Swiss-Prot top hits (Blast detail)	Score	e value
Q9FK68 Ras-related protein RABA1c	1051	2e-113
P40393 Ras-related protein RIC2	928	3e-099
P28185 Ras-related protein RABA1a	875	4e-093
Q01111 Ras-related protein YPT3	869	2e-092
Q39222 Ras-related protein RABA1b	862	1e-091

TrEMBL top hits (Blast detail)	Score	e value
Q9SN35 Putative ras-related GTP binding protein	950	1e-100
B2ZAR1 Putative GTP-binding protein	945	5e-100
Q6DXU0 Putative GTP-binding protein	944	6e-100
B2ZAS4 Putative GTP-binding protein	941	1e-099
Q6DXS7 Putative GTP-binding protein	941	1e-099

Arabidopsis top hits (Blast detail)	Score	e value
AT5G45750.1 AtRABA1c (Arabidopsis Rab GTPase homolog A1c); GTP binding	1052	1e-114
AT4G18800.1 ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D); GTP binding	954	2e-103
AT1G06400.1 ARA-2; GTP binding	876	3e-094
AT1G16920.1 ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B); GTP binding	863	9e-093
AT5G60860.1 AtRABA1f (Arabidopsis Rab GTPase homolog A1f); GTP binding	862	1e-092

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


7	2			100%

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