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Information for unigene UN04284
| FASTA Sequence |
| Unigene ID: UN04284 | Length: 1167 |
SSR | | GGATTACTCTAACAGAGATAAATACTTTCTTCACTTTCTTCTTCCTTCACCACTTGACTCTCTCTCTCTCTCTCTCTCATGAACTC
CAACGACCAATATCCAATGGGCAGACCCGACGAAACCACCACCACCACCTCCGGCACTTCTCGAACCTACGCCATGAGCGGGAAGA
TCGTGCTCAGCGCCATCGTCATCCTCTTCTTCGTCGTCATCCTAATGGTCTTCCTCCATCTCTACGCCCGCTGGTACCTCCTCCGC
GCTCGCCGCCGCCATTTCCGCCGCCGCAGTCGTAACCGTCGCTCCACAATAGTTTTCTTCGCCGCCGCGGATCCCTCCACCGTCGC
CGCCGCCTCTCGCGGACTCGATCCGGCGGTGATCGAGTCACTCCCCGTTTTCGCTTTCTCCGAGTCGACTCACAAAGATCTGTTCA
CCGAGTGCGCGGTCTGCCTCTCCGAGTTCGAGGAAGGCGAGTCGGGTCGGGTTTTACCCGGCTGCAAACATACTTTCCACGTGGAC
TGTATAGATATGTGGTTCCATTCTCACTCCACGTGTCCTCTCTGCCGCTCTCTCGTCAAGCCTGAGGTAACTGCGACGGTGATGGA
GGAGCAAGTCGTAGTCACGATTTCTCCTGAACCGGTTTCTGCGGTTGAACCGGGTTCGAGCTCTGGATTGAGGGATGAACCGGCGA
CGGACGATTTAATGAGAAAACCGGCTGCGATTGAGGTGCCGACGAGGAGGAACTTGAGCGAGTTTGAAGACGATAACTCGCCAGCG
AGTCACTCGTTTAGGTCTCCGATGAGTCGGATGTTGTCTTTCACGCGGATGTTGAGCAGAGGTAACGCCTCGTCGCCCGTAGCCGG
AGCTCCGGCTCAATCTCCGTCGACTAACTGCCGGATAGCGATGTCCGAGTCGGATATCGAGCGTGGGGGAGGAGAAGAGACTAGGT
GAGTTATTATTGGTCGGGAAGTAAACTACAATTTTATTACATGATTGATAAAAAGTCAACAAGGCTTTGTCGACGGTTGATTTAAG
TTCCCGTGACACGTTGCGTAATCTTAACGAATCTTATTCACCATGTGTTTTACTTCTGTTAGTTTAGATAGAATTGTCTGAAAGAT
GTACATAAGTTGTCAGTCGTCGATGATGTTAAATTGAATCTTTTTTTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002883022 hypothetical protein ARALYDRAFT_479140 [Arabidopsis lyrata subsp. lyrata] | 742 | 3e-076 |
| AAM65773 putative RING zinc finger protein [Arabidopsis thaliana] | 725 | 3e-074 |
| NP_188294 RING-H2 finger protein ATL2 [Arabidopsis thaliana] | 717 | 2e-073 |
| AAC77829 putative zinc finger protein [Arabidopsis thaliana] | 711 | 1e-072 |
| XP_002516957 ring finger protein, putative [Ricinus communis] | 607 | 1e-060 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8L9T5 RING-H2 finger protein ATL3F | 717 | 1e-074 |
| Q9LZJ6 RING-H2 finger protein ATL3L | 425 | 7e-041 |
| Q8LF65 RING-H2 finger protein ATL4G | 372 | 1e-034 |
| O22255 RING-H2 finger protein ATL2N | 349 | 5e-032 |
| Q9SLC3 RING-H2 finger protein ATL2L | 269 | 9e-023 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q4FE42 At3g16720 | 717 | 2e-073 |
| B9RT88 Ring finger protein, putative | 607 | 9e-061 |
| C6TE62 Putative uncharacterized protein (Fragment) | 547 | 8e-054 |
| B9N029 Predicted protein | 501 | 2e-048 |
| B9HXR4 Predicted protein (Fragment) | 490 | 3e-047 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G16720.1 ATL2; protein binding / zinc ion binding | 717 | 9e-076 |
| AT3G62690.1 ATL5 (ATL5); protein binding / zinc ion binding | 425 | 6e-042 |
| AT4G15975.1 protein binding / zinc ion binding | 386 | 2e-037 |
| AT2G47560.1 zinc finger (C3HC4-type RING finger) family protein | 349 | 4e-033 |
| AT2G42360.1 zinc finger (C3HC4-type RING finger) family protein | 269 | 8e-024 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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