RadishBase

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Information for unigene UN04343

FASTA Sequence

Unigene ID: UN04343	Length: 793	SSR
GGCATCATTTTGCTTCCAATCCTTATGGTGAACAGTCTCCCTCTCTCTCTATCCACCTTCTCTCTCTCTTTAGCTATTGATTGTTG ATTTCTCTCTCTCTTTCTATCACACCTAACCTTATCATTTCAACCTGAAACTCTTGCACGATCCAGGCCATGACTACGGAGGAAGC TAAGGTCGTCGTGCCAAGGAACTTTAGATTGTTGGAGGAGCTAGAGAGAGGTGAGAAAGGGATCGGAGATGTTACCGTGAGCTATG GAATGGATGATGCTGATGATATCTATATGCAGTCCTGGACTGGCACCATTTTCGGCCCTCACAATACTGCATACGAAGGGAAAATC TTCCAGCTGAAGCTCTTCTGTGGCAAGGAATACCCTGAAAGTCCACCAACTGTCAGGTTCCAGACCCGGATCAACATGGCTTGTGT CAACCCTGAAACTGGAGTGGTTGAACCGAGTCTCTTCCCTATGCTCGCAAACTGGCGGCGAGAATACACAATGGAGGACATTCTGA TTAAGCTGAAAAAAGAAATGATGACTTCACATAACCGCAAGCTAGCTCAACCCCCGGAAGGTACCGAGGAAGCTAGGGCGGATCCA AAGGGACCAGCTAAATGTTGTGTGATGTGAAGAGAGAGAGAGAGAGAGAAGTTGGAGGGAACCACGGTCAATTTGTATTAATAGAA GGGATAATGTATATATAAAAACATCGTTTGAAGCTTTTGATATTTGCCTACGACTTGAATGTTATACTGTTTGTTTGAGATTCTAT AATATATGTCCACCAAAAA

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_564191 ubiquitin-conjugating enzyme E2 variant 1A [Arabidopsis thaliana]	806	6e-084
XP_002893271 hypothetical protein ARALYDRAFT_889865 [Arabidopsis lyrata subsp. lyrata]	793	2e-082
XP_002887321 hypothetical protein ARALYDRAFT_476195 [Arabidopsis lyrata subsp. lyrata]	717	1e-073
AAM65883 E2, ubiquitin-conjugating enzyme, putative [Arabidopsis thaliana]	716	2e-073
NP_564994 ubiquitin-conjugating enzyme E2 variant 1B [Arabidopsis thaliana]	715	2e-073

Swiss-Prot top hits (Blast detail)	Score	e value
Q93YP0 Ubiquitin-conjugating enzyme E2 variant 1A	806	3e-085
Q9CAB6 Ubiquitin-conjugating enzyme E2 variant 1B	715	9e-075
Q9SVD7 Ubiquitin-conjugating enzyme E2 variant 1D	611	1e-062
Q9SJ44 Ubiquitin-conjugating enzyme E2 variant 1C	584	1e-059
Q54D06 Probable ubiquitin-conjugating enzyme E2 variant	422	9e-041

TrEMBL top hits (Blast detail)	Score	e value
B9HW26 Predicted protein	687	2e-070
A5B7Q8 Putative uncharacterized protein	664	1e-067
B9HJF6 Predicted protein	660	3e-067
C6T394 Putative uncharacterized protein	659	4e-067
B3TM02 Ubiquitin-conjugating enzyme 2	656	1e-066

Arabidopsis top hits (Blast detail)	Score	e value
AT1G23260.1 MMZ1 (MMS ZWEI HOMOLOGUE 1); protein binding / ubiquitin-protein ligase	807	2e-086
AT1G70660.1 MMZ2 (MMS ZWEI HOMOLOGE 2); protein binding / ubiquitin-protein ligase	716	7e-076
AT3G52560.1 UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4); protein binding / ubiquitin-protein ligase	611	1e-063
AT3G52560.2 UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4); protein binding / ubiquitin-protein ligase	599	2e-062
AT2G36060.1 ubiquitin-conjugating enzyme family protein	584	1e-060

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


7	1			50%


8	1			50%

Unigene Members	Member information