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Information for unigene UN04455
| FASTA Sequence |
| Unigene ID: UN04455 | Length: 784 |
SSR | | CTTAACGATAAAGACTAAAAAATCCACAAAGTGAAACGAAACTGATTCAAATTACAATACTTTCTCAAAGCTTAACCAACAATTCA
AACAAAAAGACCCATAAACTCCGGAAATAAAAACACAATTTTTATATTAAAAAAGTTGAGATTGTTAAAACACATTTTAAGCAATG
GAAACCTTAGCACCAGCTTCTTCAAGCTGCTTCTTAGCCTCCTCAGCTTCATCCTTAGTCACACCTTCCTTGAACTTCTTCGGCAG
ACCTTCGATGAGCTCCTTCGCCTCCTTCAACGCCAAGCTAGTCAAAGCCCTCACCGCCTTAATCACCGCGATACGCGAGCTGCTGG
GCACCTCGTTAATCACCACGTCGAACTCGGTCTGCTCCTCCACCGCGGCCGCCGCGCCACCGCCGTCTCCCGGAGCGGCGACAGCC
GCCGCGGCGGGAGCCAGGGAGAGGGGGGAGACGCCGAACTTGTCCTGGAGGTAGTCGACGAGGATGCGGGCCTCCTCGAGGGTGAG
GGAGGAGATCTCGGATCCGATTTTCTCGATTTTTTCGGGGGCTTCGACGGCGGAGATGGGGCGGAGGTGGGTCGCGCGGTGGCTGA
TGGTCGTGGAGGAGGAGGAAGAGAGGAAGCGAGATGGGAATTCGAGAGTGGTGGGTCGGGAGAGGAAGGCGTGGGAAGAGGTGAGA
GTTGGGGAAGATGAGGAAAGGATTGAGCTTGCGGTGGAGAGAGTTGTCGTCGCTGCCATTTTCGCTCTTTAGCTTTTTGTTGTTTC
TCTCTCTCTC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_189421 50S ribosomal protein L12-1 [Arabidopsis thaliana] | 769 | 1e-079 |
| XP_002875404 ribosomal protein L12-A [Arabidopsis lyrata subsp. lyrata] | 743 | 1e-076 |
| CAA48183 ribosomal protein L12 [Arabidopsis thaliana] | 728 | 6e-075 |
| NP_189423 50S ribosomal protein L12-3 [Arabidopsis thaliana] | 727 | 8e-075 |
| AAM64725 50S ribosomal protein L12-C [Arabidopsis thaliana] | 723 | 2e-074 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P36210 50S ribosomal protein L12-1, chloroplastic | 769 | 5e-081 |
| P36212 50S ribosomal protein L12-3, chloroplastic | 727 | 4e-076 |
| P36211 50S ribosomal protein L12-2, chloroplastic | 623 | 4e-064 |
| P02398 50S ribosomal protein L12, chloroplastic | 551 | 9e-056 |
| P36688 50S ribosomal protein L12, chloroplastic | 545 | 5e-055 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8LBJ7 50S ribosomal protein L12-C | 723 | 2e-074 |
| Q53WU1 SocL12 (Chloroplast ribosomal protein) | 551 | 1e-054 |
| A9PBU0 Predicted protein | 546 | 5e-054 |
| B6UIC1 50S ribosomal protein L12-1 | 461 | 4e-044 |
| B6SR22 50S ribosomal protein L12-1 | 455 | 2e-043 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G27830.1 RPL12-A (RIBOSOMAL PROTEIN L12-A); structural constituent of ribosome | 770 | 4e-082 |
| AT3G27850.1 RPL12-C (ribosomal protein l12-c); structural constituent of ribosome | 743 | 5e-079 |
| AT3G27840.1 RPL12-B (ribosomal protein l12-b); structural constituent of ribosome | 624 | 3e-065 |
| AT4G37660.1 ribosomal protein L12 family protein | 199 | 6e-016 |
| AT1G70190.1 ribosomal protein L12 family protein | 183 | 4e-014 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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