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Information for unigene UN04541
| FASTA Sequence |
| Unigene ID: UN04541 | Length: 1349 |
SSR | | CGGTGAATTGATTTGTTGCATTTGGATTTTGTAAACAACCGATTTCACTTTCGTCATTTAGAGTTTTAGTGAAATGAGAGAGAACA
AATGTTAAAGAAGAGAAGAGAAGAGAAGAGAAGGTAGTAAGTTCAAGAAGGAGTGACGCCCTGTTTGGCCTTCAGGACAAGCTCCT
CGGTGGTGGTCCCTATGATCTCGTTGGCTCGCTTCAGCCCCATGCAGTAGTACCTTCCAATGGTGTCACGGGCAACGATCCCCAAC
TTCTCTAGCTTCTGGACTGCATCATCCACATCAAAGTTACACCTCTCACCAAACTCTTCCTTTATCAGTTCCTCACATCTCAAATC
CAGATCCTCCAAGGTAGCTTTCCCCTGCTCCATTAGTATGTAGAAGGAAATCATCACCTCTTTTACTTCTTGCTGAATAACGTCAT
CGCACAAGTGTAATAGCGTTCCCTTCCCGCTGCCATGTTCTGCTGGAAAGTGAAGTATGTTTTGGCACAATAACCAACCACTGTGG
AGAGAACTGCAAAGATTACCCATGGGTCTGCTTTCGGCATCTCAACTGAAGTAACCACGGCAACCAGACCAACTACGGCAGATATC
AGAAATTTGACCCAATCCATTGGAGTCAGTCCAGGATTTCTTTTCTCAGGAAGCACAATCTCCATGTCGGCCATAGGAATGTTTTT
GAAATGCTTGACGTAAATTCCTCTTTCCTGATTTGTTTTAGAGCTGGCTCGCCTATAAACAACAATCATTCTATCAAATGTAGGCT
CTTGTATCGTGAGCTTGCTCAAGAAACTCTTAAAGCTCAATTGTGTATTCTCAAGGCGAATACGCACACATACAAGTCCTCATCAT
CTGCTTCAGGGTTTGTCTCATCATCTTTTTTGGGATCTTTCTTTTGATGTCTGCCTGACTGTTTGCCACGTAGCTTATCTAACCAA
GTGATTTTCAGGAAATATGACCAAATACGTGATATGATCACATCTAATTTCTCCATGAAAAAAAAATCTGTGGTTTTATCCATCCC
AATACCACGCCTGAAGATGACATAATTATCAGAAAAGTCTGGAAGATTTTCATGTGGATGATCCTCAAAATATCTCTTGCAGAGCT
TCAGAAACTCTTGTCTATCATTGCTATGTTCAATGAGATTAGCCAAGGTCATGATGAGCTTAGGTTTGAGGATAGGGATGACGGAT
TCGGGCTCCAGACGAATCGTTTCCTTTTTCCGTTCCGCCGCCATCTCTTTTGGAGATCCGATTTTAGGAAGATAGGAGATCCTCGA
TGATTTTTTTAAGACAAAGAACAGGATTATAACTGAAGCCCCCTTCTTCTTGTCCCTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_188565 uncharacterized protein [Arabidopsis thaliana] | 613 | 3e-061 |
| BAB02458 unnamed protein product [Arabidopsis thaliana] | 582 | 1e-057 |
| XP_002885308 hypothetical protein ARALYDRAFT_342068 [Arabidopsis lyrata subsp. lyrata] | 569 | 4e-056 |
| XP_002303016 predicted protein [Populus trichocarpa] | 542 | 5e-053 |
| XP_002512825 conserved hypothetical protein [Ricinus communis] | 534 | 5e-052 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8RWC3 Putative uncharacterized protein At3g19340 | 613 | 2e-061 |
| Q9LT83 Genomic DNA, chromosome 3, P1 clone: MLD14 | 582 | 9e-058 |
| B9GNF9 Predicted protein | 542 | 4e-053 |
| B9RGW6 Putative uncharacterized protein | 534 | 3e-052 |
| B9IA68 Predicted protein | 531 | 7e-052 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G19340.1 LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: aminopeptidase (TAIR:AT5G13940.1); Has 143 Blast hits to 138 proteins in 46 species: Archae - 0; Bacteria - 59; Metazoa - 12; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). | 613 | 1e-063 |
| AT5G13940.1 aminopeptidase | 463 | 3e-046 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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