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Information for unigene UN04648
| FASTA Sequence |
| Unigene ID: UN04648 | Length: 775 |
SSR | | TTTTTTTCAGAGATCGACGAAGAACAAAATTTAGGCGAAAAAAAAAATAAAATGCTGGCTAGGGTTTGTAGATTCAAGTCTTCTTC
TTCTTCTTCTTCTTCTCCTGCTGTGTCTGCGGCTAGATTGTTCTGTACGAGATCGATTCGTGATACTCTGGCCAAGGCAAGCGGAG
AGAGTTGCGAAGCAGGTTTTGGAGGAGAGAGTTTGAAGCTGCAAAGTGGGTTTCATGAAATCAAAGGTTTAGAGGATGCGATTGAT
TTGTTCAGTGACATGCTTCGATCTCGTCCTTTACCTTCTGTGGTTGATTTCTGTAAATTGATGGGTGTGGTGGTGAGAATGGAACG
CCCGGATCTTGTGATTTCTCTCTATCAGAAGATGGAAAGGAAACAGATTCGATGTGATATATACAGCTTCACCATTCTGATAAAAT
GTTTCTGCAGCTGCTCTAAGCTCCCCTTTGCTTTGTCTACATTTGGTAAGATCACCAAGCTTGGACTCCACCCTGATGTTGTTACC
TTCAACACCCTGCTCCACGGATTGTGCGTGGAAGATAGGGTTTCTGAAGCTTTGAATTTGTTTCATCAAATGTTTGAAACGACATG
TAGGCCCAATGTCGTAACCTTCACCACTTTGATGAACGGTCTTTGCCGCGAGGGTAGAATTGTCGAAGCCGTAGCTCTGCTTGATC
GGATGATGGAAGATGGTCTCCAGCCTACCCAGATTACTTATGGACAATCGTAGATGGGATGTGTAAGAAGGAGATACTGTGTCTGC
A
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| CAD61286 fertility restorer homologue [Raphanus sativus] | 1100 | 4e-118 |
| BAF73723 pentatricopeptide repeat protein [Raphanus sativus] | 1100 | 4e-118 |
| BAF73724 pentatricopeptide repeat protein [Raphanus sativus] | 1098 | 7e-118 |
| ABO70667 restorer-of-fertility [Raphanus sativus] | 1089 | 8e-117 |
| CAD61285 fertility restorer [Raphanus sativus] | 1080 | 9e-116 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9LPX2 Pentatricopeptide repeat-containing protein At1g12775, mitochondrial | 486 | 3e-048 |
| Q9SH60 Pentatricopeptide repeat-containing protein At1g64100 | 466 | 7e-046 |
| Q0WKV3 Pentatricopeptide repeat-containing protein At1g12300, mitochondrial | 465 | 9e-046 |
| Q9ASZ8 Pentatricopeptide repeat-containing protein At1g12620 | 454 | 2e-044 |
| Q6NQ83 Pentatricopeptide repeat-containing protein At3g22470, mitochondrial | 436 | 2e-042 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A7BJL0 Pentatricopeptide repeat protein | 1100 | 3e-118 |
| Q84KB6 Fertility restorer homologue | 1100 | 3e-118 |
| A7BJL1 Pentatricopeptide repeat protein | 1098 | 5e-118 |
| A4URR1 Restorer-of-fertility | 1089 | 6e-117 |
| B9VQL7 PPR protein | 1080 | 6e-116 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G12775.1 LOCATED IN: mitochondrion; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G12300.1); Has 27792 Blast hits to 6269 proteins in 197 species: Archae - 2; Bacteria - 23; Metazoa - 895; Fungi - 767; Plants - 24554; Viruses - 0; Other Eukaryotes - 1551 (source: NCBI BLink). | 486 | 3e-049 |
| AT1G64100.1 pentatricopeptide (PPR) repeat-containing protein | 466 | 6e-047 |
| AT1G64100.2 pentatricopeptide (PPR) repeat-containing protein | 466 | 6e-047 |
| AT1G12300.1 pentatricopeptide (PPR) repeat-containing protein | 465 | 8e-047 |
| AT1G12620.1 pentatricopeptide (PPR) repeat-containing protein | 454 | 2e-045 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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