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Information for unigene UN04666
| FASTA Sequence |
| Unigene ID: UN04666 | Length: 1489 |
SSR | | GGAAGGTCCGCCGTTTTGGTTCCATACAGATTCTGGGCTCATTTCTTCTTCTTTTATCGATTGAATTTTTTTTTTTTTAATTTGTT
CTTTGTACATAAAAACCCTAATTTTGATACATAAGCTTTAAGAACCTTCTCGAGAGATCCTTTGGTGTACACTTTACTGTTTTTTT
GGATTTGATTTGATTTGATTTGAAGAAGAAGAAATGCCTCCAAAGCAACAACCAAAGGCAGATTTGGCGAAAAAGCAGAAGCAAGT
GGAAGACAAGACATTCGGTCTGAAAAACAAGAACAAGAGCAAGAATGTTCAGAAGTATGTCCAGAGTCTCAAGCAATCTGTTCAAC
CCAAACCCGACGCTTCTAAAGTTGCAGCCAAGAAAAAGAAAGAGGAAGAGAAAGCGAGAGAACAGGAGTTGAATGAGTTGTTCAAG
GTTGCCATTAGTCAGCCTAAAGTTCCTGTTGGTGTGGATCCAAAGTCCATCTTGTGTGAGTTTTTCAAGGCGGGGCAGTGTCAAAA
GGGTTTCAAGTGCAAATTCTCTCATGATTTGAACATTCAAAGGAAGGGTGAGAAGATCGATATCTACAGCGACAAGCGTGATGAAG
ATGGAGATATGGAGGAGTGGGATCAAGAGACCCTTGAGAAGGTTGTGGAATCGAAGAAAAATGAATACAACCAGAACAAGCCAACT
GATATTGTTTGCAAGTATTTTCTGGACGCGGTGGAAAAGAAACAGTATGGGTGGTTCTGGGCTTGCCCCAACGGTGGCAAAGAGTG
TCATTACAGACACGCTCTTCCTCCTGGGTATATCCTTAAATCTCAGATGAAGGCTCTCTTGGAAGAGGAGTCACAGAAGATGCCGG
TAGAAGAAGAAATCGAAAACGAGCGTGCAAAACTGAAAACAGCAACACAAATGACACCTGCGTTATTTATGGAGTGGAAGAGGAAG
AAGATAGCTGAGAGAGATGCAGGTTTGGCTGCTTCTCAGGCGGAGAGAGCTAAGAACGACCGTATGAGTGGTCGGGAGCTGTTTCT
GTCCAATGCAAGCTTGTTTGTGGATGATGCTGAGGCTTTTGAAGAATACCAGAGGGAAAAAGAAGAGGAAGAGATTGAACAAAAGG
AAAATAACAAAGAAACAGAGGCAGGGACAAGCAAGAGTAGTGTTGATGCTGAACAGAGTTCGAAAGAAGTGGATGAAGACGACGAA
GATGATGATGATGATGATGATGATGATTTGGACATGGACGAGCTTGATGAATTGGAAGCAAGCTTGTCGAAAGCGTCGATCCAGAT
TAGTGAGCCAAAGAATGAAGGATCATCATCTTGAGATGTGTGAGACGGAGAGGAAAGCACATGTTTTGGTTTGTGTACTTTCGATA
ATATTGGATTGTGTACTTTCAGTTACTGTCTTAATATTTTAAAGCTCATCAAAGACTAATACCCCCCCCTCTTGTTGAGAAAAAAA
AAGGCTTTTCTCAACTCCTTAAAAAAA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002883934 zinc finger (CCCH-type) family protein [Arabidopsis lyrata subsp. lyrata] | 1796 | 2e-198 |
| NP_179618 zinc finger CCCH domain-containing protein 21 [Arabidopsis thaliana] | 1776 | 5e-196 |
| XP_002525195 zinc finger protein, putative [Ricinus communis] | 1513 | 2e-165 |
| XP_002456593 hypothetical protein SORBIDRAFT_03g039020 [Sorghum bicolor] | 1454 | 1e-158 |
| XP_002312050 predicted protein [Populus trichocarpa] | 1441 | 4e-157 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9SK74 Zinc finger CCCH domain-containing protein 21 | 1776 | 2e-197 |
| Q0JHZ2 Zinc finger CCCH domain-containing protein 11 | 1425 | 1e-156 |
| Q54DA5 Zinc finger CCCH domain-containing protein 15 homolog | 809 | 3e-085 |
| Q5H7N8 Zinc finger CCCH domain-containing protein 15 | 674 | 1e-069 |
| Q1RMM1 Zinc finger CCCH domain-containing protein 15 | 669 | 5e-069 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9SGS6 Zinc finger protein, putative | 1513 | 1e-165 |
| C5XP17 Putative uncharacterized protein Sb03g039020 | 1454 | 7e-159 |
| B9HM02 Predicted protein | 1441 | 2e-157 |
| B6TD33 Nucleic acid binding protein | 1436 | 9e-157 |
| B9MT73 Predicted protein | 1404 | 5e-153 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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