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Information for unigene UN04679
| FASTA Sequence |
| Unigene ID: UN04679 | Length: 977 |
SSR | | TTGTCCCTATCTCTCTCTCTCTCTCTCTCCCACACTTCTTCCTCTGCAATGGCTTCATCAATAGTAACCTCAAGCTTCAAGCCTTT
AGTCATGGCGGACTCTTCCTCTTCCTTTTCCACCATCTTCCCCCACCCTTCACTCTCCACTATCCACCCTCGCTGCTCCCTCCTCA
CCAACCTCCCGCTCGCTTTCTCCCGCGTCTCCCTATCTCTCAAAGCCAAAACCAACCTAAAGAAGGAGGCGACTTCCCAGAGCCGC
CGGAGGAAGCGAAACTCTTCGTCGGAAACTTGGCTTACGATGTTGACAGTCAAGCCTTGGCTATGCTCTTTGAGCAAGCCGGTACT
GTTGAAATCGCTGAGGTTATCTACAATAGGGAGACAGACCAGAGTCGTGGGTTTGGATTTGTGACGATGAGTACAGTGGAGGAAGC
TGAGACTGCTGTTGAGAAGTTCAACCGTTATGATCTGAACGGACGGCTTCTGACAGTAAACAAGGCAGCACCAAGAGGGTCACGTC
CAGAACGCCAACCTAGGGTATATGAACCTGCGTTCAGAGTCTATGTGGGAAACCTACCGTGGGATGTGGACAACGGTCGTCTAGAA
CAAGTTTTCAGTGAGCATGGCAAAGTTGTGGAAGCTCGAGTGGTTTATGACCGTGAGACGGGTCGTTCACGTGGGTTCGGTTTTGT
CACAATGTCTAACGAGACTGAACTCAACGACGCTATTGCTGCTCTTGATGGACGGAACATGGAGGGTAGAGCAATCAGGGTGAATG
TAGCGGAGGAGCGTCCGAGGCGTGGATTTTAAGGATTGAGATTATCTCTTCTGCCAGTTTCCTCTCTCTCTGTCTCTCTTATCGCT
TTGCATTTTGTTTAGACGAGATTCTTACACTCTTTGATGATTTTTTTTGTTGTGTCTGAACACCTTTGATGATTTTTTTGTTGTCT
GAACTAATGCTTATACTATAGCAAAAAAAAA
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| GenBank top hits (Blast detail) | Score | e value |
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| XP_002867645 RNA-binding protein cp31 [Arabidopsis lyrata subsp. lyrata] | 947 | 4e-100 |
| BAA06520 RNA-binding protein cp31 [Arabidopsis thaliana] | 888 | 3e-093 |
| BAA06521 RNA-binding protein cp31 [Arabidopsis thaliana] | 888 | 3e-093 |
| NP_194208 ribonucleoprotein [Arabidopsis thaliana] | 888 | 3e-093 |
| AAA18379 RNA-binding protein 2 [Arabidopsis thaliana] | 888 | 3e-093 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
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| Q04836 31 kDa ribonucleoprotein, chloroplastic | 888 | 1e-094 |
| P19683 31 kDa ribonucleoprotein, chloroplastic | 766 | 2e-080 |
| P19682 28 kDa ribonucleoprotein, chloroplastic | 764 | 3e-080 |
| P28644 28 kDa ribonucleoprotein, chloroplastic | 752 | 7e-079 |
| Q08935 29 kDa ribonucleoprotein A, chloroplastic | 501 | 8e-050 |
| TrEMBL top hits (Blast detail) | Score | e value |
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| Q39209 RNA binding protein (Fragment) | 888 | 2e-093 |
| Q94EH5 AT4g24770/F22K18_30 | 884 | 5e-093 |
| B9RAR1 Ribonucleoprotein, chloroplast, putative | 842 | 4e-088 |
| Q9FGS0 AT5g50250/K6A12_11 | 830 | 9e-087 |
| Q8SMH8 RNA-binding protein | 822 | 8e-086 |
| Arabidopsis top hits (Blast detail) | Score | e value |
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| AT4G24770.1 RBP31 (31-KDA RNA BINDING PROTEIN); RNA binding / poly(U) binding | 889 | 8e-096 |
| AT5G50250.1 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative | 830 | 5e-089 |
| AT1G60000.1 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative | 389 | 7e-038 |
| AT2G37220.1 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative | 267 | 1e-023 |
| AT3G53460.1 CP29; RNA binding / poly(U) binding | 266 | 1e-023 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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