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Information for unigene UN04793

FASTA Sequence
Unigene ID: UN04793Length: 1116 SSR 
GGAAAAAAAAATTAGATTATCTAGTTGAATTATTATATCTATACAAGAAAAAGCAGAGATATTCATTTGAACGAAACAAAAACAAA
ATATTTTCGTATAATATATGATCAGTTACATACAACTTCCAAGATCGTGTTAGATGGTGGTGATACGTTTAGTGATTGGCTCTTTA
AGCGTTTGGTGAAGTAGCATGTACTTTTACGATGTCTCTGCTGCTTCCTCTGATTGCATTGCGCTTAGCTTCTTCTTCGCATAGAT
GGCGCAAACTATAGTCGCGCTCGCAGTTACACAGAAACCAAGAACATTCACTACTATCTCCATGGCCGAAAGACCGTGTCTCTTTT
CTGATACAACAGCTAGTGTTCTTAGCATTATTCCCGTGTAGATGAGACAAAGATCTCAGGGACCATCCAACAAGAGATCTAAGATG
TAAGGACCGTAGTGAACTCCAGTGGCCAATGCGCAGTAGTTGTAAACCATGTAAGGGAATGGAGAGACACGGATCAAGGTGACTGC
TTGAAACTGATGGAACCAGGTTCCTTCACCGGCAGCTCGAAGTATGGCTGCTTTTTTCGGGTATTGCTTCAACCATTCTTGCATGT
TGTGGAGGAAGAGATGTACAATTAAGAAAGGAAGAGTAACACCGATGGATGCTGCAGATAGAATCAAGAGAAAACCTTTTCCATAA
CCAAAGGTGAGACCAGCCATCCACATGGAAGGAGAGGAAGGAAGAAGAATGGTTGGGAACAATGCAACAGAGGCAAAGAGGAGAAG
TCCGAGCACCGGGATGCTGAATGTGCTTCCCACCCAATTTATAAACGGAATCAGTTCCTTTTCGATCAAAAAAGGAGCAATCCATT
TAATGATAACAAAGGCCAAAACAGCAAGACAAGCGAGGAGGGAGATGAATTTAAGCCAGAACCACACAGACGTCACCGACCCTAAC
GAACACCCCCCACCCGATGATCCTTCTTCTTCTTCTTCTTCATCCGATCTTCCTCTTAATTTCACGTAATCTCCATTCTCTGGATC
CTCCATTCTCAATTTCAGCTCAGGCACCGTCTTATCGACGCCATCGCCGTAAGTCATGGATCCGACCGAAGATGCAAGCAAAAA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002889935 hypothetical protein ARALYDRAFT_471395 [Arabidopsis lyrata subsp. lyrata]12461e-134
NP_172707 SNARE associated Golgi protein family [Arabidopsis thaliana]12101e-130
XP_002509643 conserved hypothetical protein [Ricinus communis]8311e-086
XP_002303542 predicted protein [Populus trichocarpa]8167e-085
XP_002299582 predicted protein [Populus trichocarpa]8032e-083

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q6NQK3 At1g1245012101e-130
B9RBV9 Putative uncharacterized protein8319e-087
B9GVU8 Predicted protein8165e-085
B9GKS8 Predicted protein8032e-083
Q84JU5 Putative uncharacterized protein At4g228507629e-079

Arabidopsis top hits (Blast detail)Scoree value
AT1G12450.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22850.1); Has 1233 Blast hits to 1230 proteins in 347 species: Archae - 2; Bacteria - 557; Metazoa - 104; Fungi - 72; Plants - 132; Viruses - 0; Other Eukaryotes - 366 (source: NCBI BLink).12106e-133
AT4G22850.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12000.1); Has 1331 Blast hits to 1328 proteins in 349 species: Archae - 4; Bacteria - 600; Metazoa - 103; Fungi - 64; Plants - 162; Viruses - 0; Other Eukaryotes - 398 (source: NCBI BLink).7625e-081
AT4G12000.1 INVOLVED IN: response to oxidative stress; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22850.1); Has 1153 Blast hits to 1150 proteins in 277 species: Archae - 2; Bacteria - 485; Metazoa - 104; Fungi - 24; Plants - 140; Viruses - 0; Other Eukaryotes - 398 (source: NCBI BLink).6991e-073
AT4G22850.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12000.1).6792e-071
AT2G02370.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12450.1); Has 1745 Blast hits to 1745 proteins in 446 species: Archae - 2; Bacteria - 792; Metazoa - 108; Fungi - 97; Plants - 119; Viruses - 0; Other Eukaryotes - 627 (source: NCBI BLink).5492e-056

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
92  67%
 
61  33%

Unigene MembersMember information