RadishBase

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Information for unigene UN04805

FASTA Sequence

Unigene ID: UN04805	Length: 1041	SSR
AATACAAATATCATTTCAGAAGCAAACAGGAATCTCACACATTTACAGAGAAACTACACACAAAAGAGGTAAACCTCAGAGAGAGA GAGAGAAGAATCAGATTGAGTTTGGAATACACAAGGAATAACAATTCGAGTTTTTTTTTGTATGAACATGGATATTCGGTCTCACT AGCTGCAGCAGCCAGTTTGAGGAGTAGTCTGGTGATCTGTGTTCTGCTTCAAGATGTTTCTCTTCACAGCACTTGATCCTTCTTCC AAAAAACTAGGTACCTCCATAATCTTCAGAGCCAGCTCTTCGAAACACTGCTCTACGTTTTGTCGAGTTCTAGCACTACACTCAAG AAACATGCACTTGAGTTCTTTCGCTAGAGCAGTCCCTTCTTCTCTGCTAACTCCTCTCTCAGATTCTCTATCAACTTTGTTTCCAA CGAGCATCCTAACGCATTCTTGGTTAGTGGAGTAAAGCTCAATCTCCTTACCCCACACATCTACTAAGTTTGTAAATGTCTCTCTT CTCGTCACATCATACACGAGAATGATTCCTTGGGCGCCTCTGTAGTAAGAGCTCGTCAATGTTCTAAACCGTTCCTGTCCAGCTGT GTCCCAGATTGTGAGTTTCAGTCTTTTGCCTCCTACTGCCAACTGTTTAATCTTGAAATCAACACCGATGGTAGGAGCGAGATCTT CGACGGAGGTGGAAATGAAGCTAACAAGCAAACTGCTTTTACCAACACCAGAATCTCCAATCAACAATATCTTAAACGACAAATCG TTTCCACTTTTCCCTGATGACGACCCCATTCTGAGAGATCAAATCAAATCAAATCCAACTTATTCAACAATTTTATTTCTTTATTA TAGAAAATGCGAATCTCATGTAGCTGTCTGTAATGCCTAATGATGATGATGATGCTTAGCTACATTCTTCTTTCCTCTATTTTATA TAAGTAGACGGAACTTTTATTACCCCGTGTATGATGCAAACCAAATTGAATTAAAAAAGAAAAAGAAAATGTGATTAAGATTTTAT TCTTTACCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_568121 RAB GTPase-C2A [Arabidopsis thaliana]	997	6e-106
XP_002267276 PREDICTED: hypothetical protein [Vitis vinifera]	883	1e-092
XP_002326383 predicted protein [Populus trichocarpa]	874	1e-091
XP_002322909 predicted protein [Populus trichocarpa]	871	3e-091
CAA98163 RAB1X [Lotus japonicus]	857	1e-089

Swiss-Prot top hits (Blast detail)	Score	e value
P36862 GTP-binding protein yptV3	509	1e-050
Q6DHC1 Ras-related protein Rab-18-B	486	5e-048
Q5ZLG1 Ras-related protein Rab-18	480	2e-047
Q5EB77 Ras-related protein Rab-18	475	9e-047
Q0IIG8 Ras-related protein Rab-18	473	2e-046

TrEMBL top hits (Blast detail)	Score	e value
O49841 AtRab GTP-binding protein	997	4e-106
B9MTI0 Predicted protein	874	8e-092
B9IFU0 Predicted protein	871	2e-091
Q40206 RAB1X	857	8e-090
B9S0D3 Putative uncharacterized protein	855	1e-089

Arabidopsis top hits (Blast detail)	Score	e value
AT5G03530.1 RABC2A (RAB GTPASE HOMOLOG C2A); GTP binding / GTP-dependent protein binding / myosin XI tail binding	998	2e-108
AT3G09910.1 ATRABC2B (ARABIDOPSIS RAB GTPASE HOMOLOG C2B); ATP binding / GTP binding / transcription factor binding	826	2e-088
AT1G43890.1 ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18); GTP binding	774	2e-082
AT1G43890.2 ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18); GTP binding	774	2e-082
AT1G43890.3 ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18); GTP binding	774	2e-082

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


9	2			100%

Unigene Members	Member information