Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN04823

FASTA Sequence
Unigene ID: UN04823Length: 1099 SSR 
GGACTCTGCTTCCGAATCCAAATCGAAATCGCCATTGTCATGTGTGTTGAGATCTCACTCCACACCATCTCATCATCAGATCTGAA
CTCTCTCCAAAAATTCTCTAATCTGTATGTGTATTGAATTCAACTCAGCTCTCGATTCCAATACATCTCTCTCTCTATCCCAATGG
CTCAACAACAGTACCTTCACCAGCGCCCCATCAAAAACCCTTTCTCTTCATCTCCTCTTTCAAACTCTTCACTCTCTAACCGCCCA
ATCTCCCTCCTCAGCCGCAACGGTCTCCTCCTCCTCCTCGCACTCCTCGTCATCCTCGGCGTGTTCCTACCCTGGGCTGGATCTCC
CTTCCCAAACACATTCTCTTCCTCTTCCCACTCCAAATGGCGCGACTACTCCCTCGCTCAAGCCGTTAGTTTTGTCGCTAAGAACG
GCACTGTGATCGTCTGCGCAGTGAGCTATCCATACTTGCCTTTCCTCAACAACTGGTTGATCAGCGTCTCCAGGCAGAATCATCAA
GACAAAGTCCTCGTGATCGCCGAGGATTACGCTACTCTCTACAAGGTTAACGAGAAGTGGCCTGGTCACGCCGTTCTCATCCCTCC
CGCCCTCGATTCTCAGACCGCTCACAAATTCGGTTCCCAGGGTTTCTTCAATTTCACATCGCGGAGGCCGCAGCATCTGTTGCAAA
TAGTGGAGCTAGGTTACAGTGTTATGTACAACGATGTTGATATGGTCTGGCTCCAAGATCCCTTCAACTATCTGGAAGGAAAACAC
GATGCTTACTTCGAGGATGACATTACTGCTATTAAGCCGTTGGATCATTCTCATGATTTACCACCTCCTGGTAAAAAAGGAAGGCC
TTATATATGTAGCTGCATGATTTTCTTGCGCCCCACTAGTGCCGCTAAGCTTCTGTTGAAGAAGTGGATTGAGGAAATGCGAGACC
AACCTTGGTCCAGAGAAAAGAAAGCTAACGATCAGCCTGCTTTTAACTGGGCTCTTATGAAAACAGCTCATCAGGTGGATCTGTAC
TTGCTTCCTCAGGCAGCATTCCCAACAGGAGGATTGTACTTCAAGAACAAGACATGGGTTAAGAGAC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002872902 hypothetical protein ARALYDRAFT_912111 [Arabidopsis lyrata subsp. lyrata]14852e-162
NP_849279 rhamnogalacturonan II specific xylosyltransferase [Arabidopsis thaliana]14475e-158
AAK43874 unknown protein [Arabidopsis thaliana]13321e-144
NP_567211 rhamnogalacturonan II specific xylosyltransferase [Arabidopsis thaliana]13321e-144
XP_002511939 conserved hypothetical protein [Ricinus communis]12494e-135

Swiss-Prot top hits (Blast detail)Scoree value
O94317 Uncharacterized serine-rich protein C215.131301e-006

TrEMBL top hits (Blast detail)Scoree value
Q9M146 At4g0122014473e-158
Q5HZ43 At4g0122013327e-145
Q94K03 Putative uncharacterized protein At4g0122013327e-145
B9RE00 Putative uncharacterized protein12493e-135
Q0R3Z8 Putative alpha 1,3-xylosyltransferase12271e-132

Arabidopsis top hits (Blast detail)Scoree value
AT4G01220.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: RGXT1 (rhamnogalacturonan xylosyltransferase 1); UDP-xylosyltransferase (TAIR:AT4G01770.1); Has 188 Blast hits to 185 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 165; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).14472e-160
AT4G01220.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: RGXT1 (rhamnogalacturonan xylosyltransferase 1); UDP-xylosyltransferase (TAIR:AT4G01770.1); Has 153 Blast hits to 150 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 142; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).13324e-147
AT4G01770.1 RGXT1 (rhamnogalacturonan xylosyltransferase 1); UDP-xylosyltransferase12186e-134
AT1G56550.1 UDP-xylosyltransferase11012e-120
AT4G01750.1 RGXT2 (rhamnogalacturonan xylosyltransferase 2); UDP-xylosyltransferase10394e-113

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
91  50%
 
71  50%

Unigene MembersMember information