 |
Information for unigene UN04835
| FASTA Sequence |
| Unigene ID: UN04835 | Length: 947 |
SSR | | GGAACGCAGCCGGAGCAAAATGAGCCCGGCATTGTTCAGAAAAGTCACCAACGACGCCGCACGGCTCATACGGCGGAACGCTGCGG
CGGAAGACCCTTTAGGTAAAACCAGCCATGCTCTTTTGAACCTTAGGCGACTGCAATCGAGGCCTCAGTTTCTTGGGAGAGGAAAG
CAAACCGGGCACTCACCTCCTTCTCCTCCTCCTCCTCATTCCTCGTCTGTTGGTTTCGTGGGATGGTATCTTGGTATGGTGAAATC
ACGCCCAGTTCTCACCAAAAGCGTCACTTCTTCCCTTATTTACATCGCCGCCGATTTGTCTTCTCAGACGATTGCAAAAAAATCAT
CAGACTCTTACGACTTGGTGAGAACATCGAGGATGGGTGGATATGGTCTATGTGTCTTGGGTCCAACACTTCACTGTTGGTTCAAT
TTCATGTCAAAACTCTTACCCAAACAGGATTTCATCACAACTTTTAAGAAAATGGCCATGGGAAATATAATTTACGGGCCTATTAT
GATGGTCACTTTCTTCTCACTGAATGTATTACTGCAGGGTGAAGGCGGATCAGACATAGTTGCCAGATTGAAAAGGGACTTTCTCC
CTGCGATGCGAAACTGTGTCATGTATTGGCCTATATGTGATTTTATTACATTCAAGTTCTTCCCCGTTCATTTACAGCCTCTTGTA
AGCAACGCGTTTTCCTATTTGTGGACAATCTACATGACTTACATGGGAAACCGTAAAAAACCAGACGCCCTTTCAAGCTGAAACAC
TCTTTGAGATCTTCTACAAAGCCATGTTTTTTGTTCCACTATGAGTTTTGGTTTCCCCTTGTTTGAATTATGATGTTAAGACAGAG
TCTATCGAGGACTTGGATGTTAAAATTTTATTTTGCTTTCGTGAAAAATTTGTTACATTGAATTACAGAAAAAGAAGTTAAAGATA
T
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002885942 hypothetical protein ARALYDRAFT_480374 [Arabidopsis lyrata subsp. lyrata] | 887 | 3e-093 |
| NP_179092 protein Mpv17 [Arabidopsis thaliana] | 883 | 9e-093 |
| XP_002867146 hypothetical protein ARALYDRAFT_491288 [Arabidopsis lyrata subsp. lyrata] | 837 | 2e-087 |
| NP_567940 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein [Arabidopsis thaliana] | 784 | 3e-081 |
| XP_002527492 Protein SYM1, putative [Ricinus communis] | 712 | 6e-073 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q4IPX8 Protein SYM1 | 223 | 1e-017 |
| Q2TXA2 Protein sym1 | 218 | 5e-017 |
| P42925 Peroxisomal membrane protein 2 | 215 | 1e-016 |
| Q66GV0 Protein Mpv17 | 209 | 6e-016 |
| Q5KND6 Protein SYM1 | 178 | 2e-012 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| O82324 22 kDa peroxisomal membrane protein | 883 | 6e-093 |
| Q9FPH4 AT4g33900 | 784 | 2e-081 |
| B9SNC3 Protein SYM1, putative | 712 | 4e-073 |
| B9GHW2 Predicted protein (Fragment) | 710 | 7e-073 |
| B9HMX4 Predicted protein (Fragment) | 706 | 2e-072 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G14860.1 peroxisomal membrane protein 22 kDa, putative | 891 | 4e-096 |
| AT4G33905.1 peroxisomal membrane protein 22 kDa, putative | 784 | 1e-083 |
| AT5G43140.1 peroxisomal membrane 22 kDa family protein | 585 | 1e-060 |
| AT5G19750.1 peroxisomal membrane 22 kDa family protein | 237 | 3e-020 |
| AT3G24570.1 peroxisomal membrane 22 kDa family protein | 156 | 7e-011 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
