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Information for unigene UN04847
| FASTA Sequence |
| Unigene ID: UN04847 | Length: 1584 |
SSR | | TCTCATCTCATTTCCTCCCTCCCTCCCTCCCTCCGCCGAAGAAGATCGAAGAATTAGGGTTTCGCGAAGAAAATGAGGGAGATCAT
AAGCATTCATATCGGTCAAGCTGGGATCCAAGTCGGTAACTCCTGCTGGGAGCTTTACTGCCTCGAACATGGGATCCAGCCCGATG
GCATGATGCCCAGTGATACTACGGTTGGTGTAGCGCACGATGCTTTCAACACTTTCTTCAGCGAGACCGGCGCTGGGAAGCATGTT
CCCAGAGCCGTCTTCGTTGATCTAGAGCCTACTGTTATCGACGAAGTCCGTACCGGAACGTACCGGCAGCTTTTCCATCCGGAGCA
GCTTATCTCCGGGAAAGAAGATGCTGCTAACAACTTCGCTAGAGGGCACTACACTGTTGGGAAGGAGATTGTGGATCTTTGTCTTG
ACCGTGTGAGGAAGCTTGCTGATAACTGTACTGGGTTACAAGGCTTCTTGGTGTTCAACGCTGTTGGTGGTGGGACTGGTTCTGGT
TTGGGGTCTCTTTTGTTAGAGCGTTTGTCTGTTGATTATGGTAAAAGGTCTAAACTTGGCTTCACCATTTACCCTTCCCCTCAGGT
TTCTACTGCTGTTGTTGAGCCTTACAACAGTGTTCTTTCAACGCACTCTCTCCTTGAACACACTGATGTTGCTGTCCTCTTGGATA
ACGAAGCCATCTATGATATTTGCCGCAGATCACTTGATATCGAGAGGCCTACTTACACGAACCTCAACAGGTTGATATCTCACATC
ATATCGTCCTTGACAACATCGTTGAGGTTTGATGGAGCTATTAATGTGGATATCACCGAGTTCCACACCAATCTTGTCCCTTACCC
CCGAATCCATTTCATGCTGTCCTCTTATGCTCCGGTTATCTCAGCAGCGAAGGCTTACCATGAGCAGCTTTCGGTCCCTGAGATCA
CTAATGCTGTGTTTGAGCCAGCTAGCATGATGGCTAAGTGTGACCCGAGGCACGGCAAATACATGGCTTGTTGTTTGATGTACCGT
GGAGATGTTGTTCCTAAGGATGTTAATGCTGCTGTTGGTACTATCAAGACTAAGAGGACTGTTCAATTTGTCGACTGGTGCCCAAC
AGGTTTCAAATGTGGAATCAACTACCAACCTCCAACAGTTGTTCCTGGAGGCGACCTCGCTAAGGTCCAGAGAGCGGTCTGCATGA
TCAGCAACAACACAGCCGTTGCAGAGGTGTTCTCACGGATCGACCACAAGTTTGATCTGATGTACGCGAAAAGAGCGTTTGTGCAC
TGGTACGTTGGTGAAGGAATGGAGGAAGGTGAGTTCTCAGAGGCACGTGAAGACTTGGCGGCACTGGAGAAAGATTATGAAGAAGT
GGGTGCTGAAGGTGGAGACGATGAGGAAGATGAAGGTGAGGAGTATTGACACCTTCTTCTCTCAAGCAATGTGCAACCAAAAGCCT
TTTTCAAATTTCTATTTCTACTTATTATTCTTGTGGATTACATGTTTCCTTTTAATCCTGTACAATATTCGTTGCACTTTCTGTTT
TTATTTTGGTTCATTCATTTGGTAAAGCGACAATTG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_197478 tubulin alpha-3/alpha-5 chain [Arabidopsis thaliana] | 2352 | 9e-263 |
| NP_001060075 Os07g0574800 [Oryza sativa Japonica Group] | 2302 | 6e-257 |
| O22349 RecName: Full=Tubulin alpha-3 chain; AltName: Full=Alpha-3-tubulin | 2296 | 3e-256 |
| ABD92942 alpha tubulin-1D [Triticum aestivum] | 2294 | 5e-256 |
| NP_001105588 tubulin alpha-6 chain [Zea mays] | 2293 | 6e-256 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P20363 Tubulin alpha-3/alpha-5 chain | 2352 | 4e-264 |
| P28752 Tubulin alpha-1 chain | 2302 | 2e-258 |
| O22349 Tubulin alpha-3 chain | 2296 | 1e-257 |
| P33627 Tubulin alpha-6 chain | 2293 | 3e-257 |
| Q43473 Tubulin alpha-1 chain | 2289 | 7e-257 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A2YMX5 Putative uncharacterized protein | 2302 | 4e-257 |
| Q0PVB0 Alpha-tubulin | 2302 | 4e-257 |
| A4K4Z3 Alpha tubulin-1A | 2294 | 3e-256 |
| B9T1E6 Tubulin alpha chain, putative | 2293 | 4e-256 |
| C0PKT5 Putative uncharacterized protein | 2293 | 4e-256 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G19770.1 TUA3; structural constituent of cytoskeleton | 2353 | 2e-265 |
| AT5G19780.1 TUA5; structural constituent of cytoskeleton | 2353 | 2e-265 |
| AT1G04820.1 TUA4; structural constituent of cytoskeleton | 2255 | 6e-254 |
| AT1G50010.1 TUA2; structural constituent of cytoskeleton | 2255 | 6e-254 |
| AT4G14960.2 TUA6; structural constituent of cytoskeleton | 2252 | 1e-253 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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