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Information for unigene UN04875
| FASTA Sequence |
| Unigene ID: UN04875 | Length: 1135 |
SSR | | GGAAGCTTCTTTGTCCTTTTAAGTTCTTGCCTTTTTTCCGATCAATCAGACCAATCTCTCTCCTTTTTGGCATCTTCGTGTTTCTT
ATATTTCTCTTGGGATTCTTCAAATCAATTCCTCGTTGCATCAGAGAGAGAGAAAGAGAGATGTATAATCAGTTAGCTATATCTTC
TTCTTCTTCTTCTTCGTACTATGAATCTTTGAAGATTTTGGAAGCTGATGTCCAACACGCAAATACTTTGGCAGAGGCAATTCCTA
TGGGGAAGAACAATGTGCGGCTCCAGATGAAACTGGTTCATACCAACTTTGCTTCATTATTACTCTTCTTGCTTCGGTGGATGGAT
CTTTCTTGCTCATGTCTGCTTCCTCGCTACTTTAACCTCTTTCATGTTCTTGTCTACAAGGTTCATTCTGATGGGCAACCGAAGCT
CACCACTCACGGGAGGAAAGCTACTGTCAGTGAGTTCTATGGTGTGATACTACCATCCCTTCAGCTATTACACAGCAACTTAGACG
AGCTGGCAAACGCAGACCTGGGGTTTGACCTTAAAAGACTCAGCAAGAAGATAACAAAAGAGGCTCGCAGCAGTAGATTCAGCAGT
GCCGGGTTTGACCGCGAGGAAGAATGTGGAATCTGTTTAGAAACTTGCACCAAAATGGTTTTGCCAAATTGCTGCCACTCAATGTG
CATCAAATGCTACCGCAACTGGAACTTGAAGTCACAGTCATGCCCGTTTTGCCGGGGGAGCATGAAGAGAGTGAACTCAGAGGATT
TGTGGGTGCTTGCTGGTGGCAACGACGTGGTGGATACAAGGACGGCTTCAAGGGAAGATTTGTTCAGATTCTACCTCTACATCAAT
AGCCTCCCCAAGGATTACCCTGAAGCTCTCTTCTTGGTTTACTACGAGTACTCAAACCTGATTTAGAATCTGGACAAACAAAGTAT
ATGTACAGATTTTTAGAAAGGTAAAAATTGTATTGTATAGAATGTAAAAACTGTGTTCAGGCTTTGGGATGATTTGATCCAACATG
CCAAAGCTCTCAGGTTTTACATCCTTTATTTTAAATAACTGTGAAATGCTTCCAAAAATAAGCTTGAATAAAAGCAATGAATAAAA
GATCTCTTTTTCATCGC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_563922 RING/U-box domain-containing protein [Arabidopsis thaliana] | 1273 | 7e-138 |
| XP_002892732 zinc finger family protein [Arabidopsis lyrata subsp. lyrata] | 1266 | 5e-137 |
| NP_001117278 RING/U-box domain-containing protein [Arabidopsis thaliana] | 1112 | 3e-119 |
| XP_002515021 ubiquitin-protein ligase, putative [Ricinus communis] | 907 | 2e-095 |
| XP_002311740 predicted protein [Populus trichocarpa] | 872 | 2e-091 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9SAF3 At1g13195 | 1273 | 5e-138 |
| B3H455 Uncharacterized protein At1g13195.2 | 1112 | 2e-119 |
| B9RMQ2 Ubiquitin-protein ligase, putative | 907 | 1e-095 |
| B9HLC0 Predicted protein | 872 | 2e-091 |
| B9HTE6 Predicted protein | 859 | 5e-090 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G13195.1 zinc finger (C3HC4-type RING finger) family protein | 1274 | 2e-140 |
| AT1G13195.2 zinc finger (C3HC4-type RING finger) family protein | 1113 | 1e-121 |
| AT1G24440.1 protein binding / zinc ion binding | 835 | 2e-089 |
| AT5G58787.1 zinc finger (C3HC4-type RING finger) family protein | 520 | 6e-053 |
| AT3G47160.1 protein binding / zinc ion binding | 512 | 5e-052 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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