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Information for unigene UN04955

FASTA Sequence
Unigene ID: UN04955Length: 1130 SSR 
GGAGGGCTCCACTTCTCTTTCCTACCATCACGTTTTCTCGAGATTTGAATAGTTTTTCGAAGATATTTGGTCATTGGATGAAACTA
GAGACAAAAGAAAAGGATGAAGATTCAGTGTAACGTGTGCGAGGCGGCGGAAGCGGCGGTGCTATGTTGCGCCGACGAAGCTGCGT
TGTGTTTGGCTTGCGATGAGAAAGTTCACGCCGCTAATAAACTCGCCGGAAAACACCAGAGACTCCCTCTCTCTGTCTCTTCCTCT
TCCATACCCAAATGCGACATCTGTCAGGAAGCTTCTGGATTCTTCTTTTGTCTGCAAGACAGAGCTTTGCTATGTAGGAAATGTGA
TGTAGCAATCCACACTGTGAACCCTCATGTTTCAGCTCACCAGCGGTTTCTTCTCACTGGAATCAGAGTTGGTCTTGAGTCTACTA
CGGACACTGGTCCTTCTACAAAACCTTCACCACCATCCAATGATGATAAAACCAGTGAGACAAAACAAGTTAACTTGCCAATATCT
GAGTCTCAGAAGATGGACTTTAGTCATCATCATCATCAGGTTGTTTTACCGGAAACTAATGTAAGTGATCACATTTCGACAAAGCT
CCCTTTTGCAAGCAGTGGATCAGCTGCTGGGAGCATTCCTCAGTGGCAAATAGAGGAGATTTTCAGATTAACTGATTTCAGTCAGA
GCTATGAATACATGGAGATCAATGGATCATTTAAGGCGGATACTAGTAAGCGAGGAGATTCAGACAGCTCTTCAATGATGCGGTCT
GGAGAAGAAGATGGAGAAGATAACAGTAACTGCTTGGGAGGGGAGACATCATGGGCTGTTCCACAGATTCCTTCTCCACCAACAGC
TTTTGGTTTAAACTGGCCCAAACATTTTAACCGCCACTCAGCAGTGTTTGTTCCGGACATATTTTCCTCAACTCCTTACACAGGTT
CTTCCCCTAACCAGAGGGTTGGGAAGCGGCGGCGACGGTTTTAAGCCATTTTCAACAACCGGCTGGTTTGTCAAGAGAGAATGTGA
GACCATTACAATGATCTGGAAACTGGTGTTATTGTAGTTTGCATGTTAATCAATGTTGAATGTTTCTTTGTTATATTAATTTAAAA
ACATGATTTTTG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
BAJ33720 unnamed protein product [Thellungiella halophila]13302e-144
NP_565183 light-regulated zinc finger protein 1 [Arabidopsis thaliana]12746e-138
XP_002887747 zinc finger (B-box type) family protein [Arabidopsis lyrata subsp. lyrata]12746e-138
NP_001185428 light-regulated zinc finger protein 1 [Arabidopsis thaliana]8713e-091
AAD30576 Highly similar to rice zinc finger protein [Arabidopsis thaliana]8581e-089

Swiss-Prot top hits (Blast detail)Scoree value
Q9SYM2 Probable salt tolerance-like protein At1g7860012742e-139
Q96288 Salt tolerance protein3971e-037
Q9SID1 Salt tolerance-like protein3763e-035
Q9LQZ7 Probable salt tolerance-like protein At1g755403324e-030
Q9FHH8 Zinc finger protein CONSTANS-LIKE 51462e-008

TrEMBL top hits (Blast detail)Scoree value
B9I1Q4 Predicted protein8192e-085
B9SEX4 Zinc finger protein, putative7753e-080
C6TKY6 Putative uncharacterized protein (Fragment)5111e-049
B8LM30 Putative uncharacterized protein4482e-042
A2X702 Putative uncharacterized protein4098e-038

Arabidopsis top hits (Blast detail)Scoree value
AT1G78600.1 LZF1 (LIGHT-REGULATED ZINC FINGER PROTEIN 1); transcription factor/ zinc ion binding12752e-140
AT1G06040.2 STO (SALT TOLERANCE); DNA binding / protein binding / transcription factor/ zinc ion binding3971e-038
AT1G06040.1 STO (SALT TOLERANCE); DNA binding / protein binding / transcription factor/ zinc ion binding3971e-038
AT2G31380.1 STH; protein domain specific binding / transcription factor/ zinc ion binding3763e-036
AT4G10240.1 zinc finger (B-box type) family protein3477e-033

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
102  100%

Unigene MembersMember information