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Information for unigene UN05032
| FASTA Sequence |
| Unigene ID: UN05032 | Length: 2019 |
SSR | | GGGTAGAGAGTTAATTGGGCAGTGAAGGAAGCAAGGGAAGATAGATAAATCTCAGTTCTTCCTCCATCGCTCTCTCGTCTCTCTCT
CGTCGCGTTTCACGTCTTGGGGCTGTTCTCCGGCGGCCGATCTCGTCGCTTCCCTGTAGATCTAATCGAAGAAGTGAACAATTTCG
TTTTAGATTTGATTCCTCCCAGTCGTCCTAGGGTGCATTCATTTTTACTACTCTGCTAAAAAGGAAAATGTCCAATTACGAAGGGG
ATGCTCCGGCTGAGTACGTGGAAGACGTAGATGATGAGATGGAAGATGTGGGAGATGATATGGATGAGGAGTTCCGTGCCGATGAT
GATGATGATGATCTCGCTGCTTCTGATTCTGATGTCGAGGAATTTGACTACTCCAATAATAAAATAGCTGATACCTCGGCAGAGCA
AGCTCGGAAAGGGAAAGATATCCAGGGGATTCCTTGGGACAGGCTTAGTATTTCTAGAGAGAAATACAGACAAACTAGGTTAGAGC
AGTATAAGAACTATGAAAACGTCCCCAACTCCGGTGAATCATCAGAAAAAGTTTGCAAGGTCACACAGAAAGGGGGAAAATTCTAT
GAATTTTGGCGGAATTCAAGATCTATCAAATCTACTATACTTCATTTCCAGTTGAGGAATTTGGTGTGGGCAACTTCCAAGCACGA
CGTGTATCTTATGTCAAACTTCCTGCTGACACATTATTCTTCTCTAACTTCCGGAAAGAAGGAAGTTCTCAACGTCCGCGGTCATG
TTGCACCATCTGAGAAACATCCTGGGAGTTTGCTGGAAGGTTTTACGCAGACTCAAGTGAGTACACTTGCGGTGAAAGACGACTTT
CTAGTTGCTGGTGGATTTCAAGGGGAACTTATTTGCAGACATCTTGATAGACCTGGCGTCAGCTTTTGCTCTCGTACCACTTATGA
TGATAATGCTATTACTAATGCTATTGAGATCTACAACAAATCCAGTGGCGCCCTTCATTTTACTGCCTCGAATAATGACTGTGGAG
TTAGAGATTTTGACATGGAGAGATACCAGCTTGTTAAGCACTTTCGTTTTCCGTGGCCAGTGAATCACGCATCTTTGAGTCCTAAT
GGTAAACTACTGGCTATTGTCGGGGACAATCCGGAGGGCCTTATAGTTGACCCCAACACCGGAAAGACGCTGGAAACACTATCAGG
ACATGTGGACTATTCCTTTGCGTCGGCGTGGCATCCTGACGTATTCACTTTCTCAACTGGAAACCAAGACAAGACCTGCCGTGTTT
GGGATTTCCGTAACCTTTCTCAATCCGTTGCTGTCTTGAAGGGTAACCTTGGAGCGATCCGGTCAATCCGCTACACGTCCGATGGG
AAATACATGGCTATGGCTGAACCAGCCGACTTTGTCCATGTCTATGACGTCTCAAAGGGTTATGAAAGAGAGCAGGAAATCGACTT
CTTCGGGGAGATATCTGGAATATCGTTCAGCCCTGACACAGAGGCGCTCTTCATTGGAGTATGGGACCGCACTTACGGTAGCTTAC
TCGAGTATCATCGGCGCAGGAACTATTCCTATCTCGATTCGTTTCTTTAAGCGAGAAGAAAAATATACACAACCCGTTCAAGGAAT
AAAAGAGAGCTCATACAGCAACCGATGAACAAATAGAAGCACCGTAGATGTATTGTGCAAGTGCTAGTAGTTAGTGTCTGTCTGTG
TACTTTGCCGGCTGATGTGTTGTATACTTATGTCTGGTCTTCTAACGCTTCAAAACTCGTTCAAGATGTGTACAGAAAGAGCTGGC
TCTGTGGTGGCACAGACTAGTACTCAGTGATGGTGTTGAAGCTGGAACCTGGTTCTCTGTTTGGTGGCATGTGAGTCTTTTCTCTT
CTTTGTATTTGTGATTGTTGTAGGAACTCGAGTGGTAAAAGATACTTTTGAGTTGGTTCTGAGTTTAGAATGTGGGAGATGCTTTT
AACTAAACTATGTTATCTCTTTCTCGTTTTATCATAGCCTT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002882817 WD-40 repeat family protein [Arabidopsis lyrata subsp. lyrata] | 2202 | 3e-245 |
| NP_566453 transducin/WD40 domain-containing protein [Arabidopsis thaliana] | 2189 | 1e-243 |
| XP_002894518 WD-40 repeat family protein [Arabidopsis lyrata subsp. lyrata] | 2065 | 2e-229 |
| NP_564699 transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] | 2054 | 4e-228 |
| XP_002330572 predicted protein [Populus trichocarpa] | 1907 | 5e-211 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9Y7K5 Uncharacterized WD repeat-containing protein C2A9.03 | 272 | 8e-023 |
| Q23256 Uncharacterized WD repeat-containing protein ZC302.2 | 162 | 4e-010 |
| Q8YTC2 Uncharacterized WD repeat-containing protein alr2800 | 149 | 1e-008 |
| O74855 Uncharacterized WD repeat-containing protein C18.05c | 146 | 3e-008 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q94AB4 AT3g13340/MDC11_13 | 2189 | 6e-244 |
| Q9C5N4 Putative uncharacterized protein At1g55680 | 2054 | 3e-228 |
| B9N5K3 Predicted protein | 1907 | 3e-211 |
| B9GHK2 Predicted protein | 1900 | 2e-210 |
| B9SGX2 WD-repeat protein, putative | 1799 | 1e-198 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G13340.1 WD-40 repeat family protein | 2206 | 4e-248 |
| AT1G55680.1 WD-40 repeat family protein | 2055 | 1e-230 |
| AT5G56190.2 WD-40 repeat family protein | 1761 | 1e-196 |
| AT5G56190.1 WD-40 repeat family protein | 1755 | 7e-196 |
| AT1G78070.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein (TAIR:AT1G36070.1); Has 110 Blast hits to 110 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 28; Plants - 80; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | 1295 | 2e-142 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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