RadishBase

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Information for unigene UN05059

FASTA Sequence

Unigene ID: UN05059	Length: 1078	SSR
GGACAGCGTTGTCCCAGTTTCTCCATTCTCTCTCTCTCTCTCGATCGACGACTGTTCTGTCGGAACCGGAGACGCGCGTCACGAGA CGAATCTGTTTGAGTCTCCGGCGATCTGATCGAGATGAGTAACAGCGAGCTTCTTACCGTCGAGCCTCTCGACCTTCAGTTCCCTT TTGAATTGAAGAAACAGATCTCATGCTCTCTTTACTTGACCAACAAGACCGACAATCATGTCGCCTTTAAGGTTAAGACAACGAAT CCGAAGAAGTATTGCGTTAGGCCTAACACTGGAGTTGTTCTTCCACGGTCCACTTGTGAAGTTCTTGTGACCATGCAAGCTCAAAA GGAAGCTCCTGCGGATATGCAGTGCAAGGACAAGTTTCTGCTTCAAGGTGTAACTGCTAGTCCTGGTATCACAGCCAAGGATGTTA CTCCTGAGATGTTTAGTAAAGAGGCTGGGTATCTGGTTGAGGAGACTAAGCTGAGAGTTACTTATGTTGCTCCACCACTACCACCA TCACCAGTCCGCGAAGGTTCTGAAGAGGGATCTTCACCAAAGGGCTTCTGTTTCTGATAACGGACAGGCTTCTGAATTTTCTAAAT TTAGCGCAGACAAGGCTGAACCTCAAGAAAACACATCTGAGCAAGGGCTCTCATCACGAAGCTAACCGAGGAGAAACAGTCTGCCA TTCAACTGAACAACAAACTTCAAAGAGAACTGGACCAGTTGAGGCGTGACAGCAAGAGAAGCCAGAGTGGTATCCCTTTGATGTAC GTTCTTCTGGTGGGACTAATCGGTCTAATTTTGGGATACATTATGAAGAGCACATAACCACCACCACCAACGCCCCTACCCACCTC GAGTTTTTAGTCCCACACACATCCAGACTTATTTCTTAACTCCTTTTCCACTCGGACATTTTTTCCCCTTTCTGTATTTGAATATT TCACCTAAGAAAGGTGCCTCTCTAGATGATTTGTGTTCCTTACATATTCATAACTCAGTTTGTTTTTAACTCTCTTTATTGTATCC AAACCTTTATGCTGAAATTTATGCGGAGATGTGAAAAGCTTAGTTT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_567101 vesicle associated protein [Arabidopsis thaliana]	947	4e-100
AAM63134 putative VAMP-associated protein [Arabidopsis thaliana]	935	1e-098
CAB82664 putative protein [Arabidopsis thaliana]	910	8e-096
NP_182039 VAP-like protein 12 [Arabidopsis thaliana]	837	2e-087
XP_002880160 hypothetical protein ARALYDRAFT_483647 [Arabidopsis lyrata subsp. lyrata]	837	2e-087

Swiss-Prot top hits (Blast detail)	Score	e value
O60119 Vesicle-associated membrane protein-associated protein C16G5.05c	183	7e-013
Q10484 Uncharacterized protein C17C9.12	181	1e-012
Q16943 Vesicle-associated membrane protein/synaptobrevin-binding protein	175	6e-012
Q9P0L0 Vesicle-associated membrane protein-associated protein A	173	1e-011
Q5R601 Vesicle-associated membrane protein-associated protein A	173	1e-011

TrEMBL top hits (Blast detail)	Score	e value
Q8VZ95 At3g60600	947	3e-100
Q8LDM1 Putative VAMP-associated protein	935	7e-099
Q9M003 Putative uncharacterized protein T4C21_10	910	6e-096
Q9SHC8 At2g45140	837	2e-087
B9RD68 Vesicle-associated membrane protein, putative	784	2e-081

Arabidopsis top hits (Blast detail)	Score	e value
AT3G60600.1 VAP (VESICLE ASSOCIATED PROTEIN); protein binding	948	1e-102
AT2G45140.1 PVA12 (PLANT VAP HOMOLOG 12); structural molecule	840	4e-090
AT3G60600.2 VAP (VESICLE ASSOCIATED PROTEIN); protein binding	723	2e-076
AT3G60600.3 VAP (VESICLE ASSOCIATED PROTEIN); protein binding	723	2e-076
AT4G00170.1 vesicle-associated membrane family protein / VAMP family protein	604	1e-062

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


11	2			67%


10	1			33%

Unigene Members	Member information