 |
Information for unigene UN05078
| FASTA Sequence |
| Unigene ID: UN05078 | Length: 1989 |
SSR | | CTCTCTCTCTCTCTCTCTCTCTCCAAGGTTGCTTCATAACAACGTCTCCGTAATCTCCCCTTCTCCAATTTTCCCCCAAATTCTTC
TCAAAACCCTAATTTTTCCAATCTTAAATTTATCCGTTAATCGAATCGGAGATTCATACTCGCCAATTGATGGGTCGCGGCTCAGC
CACGTCGACGCTCGCTCCAGGGTTCCGTTTCCACCCGACGGACGAGGAGCTAGTTCGCTACTACCTCAAGCGCAAGGTCTGCAACA
AACCCTTCAAGCTCGACGCCATCTCCGTCACCGATGTGTACAAATCCGAGCCTTGGGATCTTCCAGATAAGTCGAAGCTGAAAAGT
AGAGACTTGGAGTGGTACTTCTTCAGTATGCTTGATAAGAAGTACAACAACGGCTCCAAGACCAATCGCGCCACGGAGAAAGGCTA
CTGGAAGACGACGGGGAAGGATCGGGAGATTCGTAACGGTTCGAGAGCAGTTGGGATGAAGAAGACTCTCGTTTATCACAAGGGTC
GAGCTCCTCGTGGTGAGAGGACTAATTGGGTTATGCATGAGTATCGTCTTACTGATGATGAGTTGAAGAAGACTGGTGCCCCACAG
GATGCGTTTGTGCTGTGTAGGATATTCCAGAAAAGCGGCACGGGGCCTAAGAATGGGGAGCAGTACGGTGCTCCTTATCTTGAGGA
GGAGTGGGAAGAGGATAAAATGACTTTTGTGCCGGAACAAGATGCTCTCAGTAGTGAAGTGTTGGCCTTTGATGATGATGATGTTT
ATCTCGACATTGACGACTTTGACGAGAAGCCTGAGAATCTGGTGGTCTATGATGCCATTCCTGTTGAGCCTAATTATTTCCACGGA
GAGTCAAGCAATAATGTTGAGTCAGGAAACTACTCAGACTCTGGAAATTACATTCAACCAGAAAGCTTTGCTGTGGACTCTGGTGG
TTGCTTTGAACAGCCACTTGAAGCTTTTGAGGAGGATCAGAAGCCTATCATTCGGGATGGTGGCATTCAGCCTTGTTCTATGTTCC
CCAATGAGCAAAGCGGTTGCGGTGTGTAAGATGAGAGCGCGGTGAATCTGGAAACGTCCAACAGTAATGTGTTTGCGGGTGGTAAT
TGCTACAGTGACATTCCTATTGATACCAACTATATTATGCCTGACGATCATTCATCGATCCTAGCAACAACCTTCCACTCGGCGAT
GATCTTTTCCTGGAAACGGATGAGCTCGGCAGTGCTCTACCAGATGATTTTGACTTTGAAGATTATCTTAACTTCTTTGACGATGT
GGACGCTCAGAATATGACTCTTGATGTTTCTCAACTGTTGGAATCTGAAGAAGCGGTTCCTGCTCAAGAAGGCCACGACCAGATAC
CTTCCTCTGAAGACTTGGAGAATGAGGGCACAGGAGGCAAAGTGGTGGTGGAGAAAGATGAAACTGGCGAAGATCTTCCTCGAAGC
AAGATGCAGATGTTGTCACAGACTTTGATCAGCTTCGAAGTACCTTTCCTCAAAAAGCGGGCCAGATTGTGGAGCGACATCTTCAT
TTGCTTCTCAGTCCAAACAAAGGACGCTCGGCTACACGCAGGGCAATCTTCAGGCTCGGTCCACGTCACTGCAGGTATAATCAGAA
TATCAAACACGACTCTAGCAGCGGATATGGGCTGGTCATATGACAAGAACGATAACCTCAACGTAGTCCTTTCTTTCGGCTTGGTC
CAACAACGAGATGATGGGATGAGTTCCTCTGTAAACAAGACAGGAGTTCCAGCGACAAGAGCTATGTTGATCTTCCTTTGCTTATG
GGTTCTCTTACTATCTGTTAGCTTCAAAGTGGCAACCATGGTCTCTGCTCGGTAATTGCATCATCTTCGGTGTTTGTACCTCTCCA
ACTTATATATAGGCTTTACTTTGGCAGTGCTTTGCTGCCCAATATTTTATCTTTCATGTAGTTTGAACTCTCATTGCAGTTTCTGA
CTATTTCTTCC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002871092 hypothetical protein ARALYDRAFT_908325 [Arabidopsis lyrata subsp. lyrata] | 1541 | 1e-168 |
| NP_196061 NAC domain-containing protein 78 [Arabidopsis thaliana] | 1515 | 1e-165 |
| AAF09254 NAC2 [Arabidopsis thaliana] | 1486 | 3e-162 |
| XP_002882677 ANAC053 [Arabidopsis lyrata subsp. lyrata] | 1300 | 1e-140 |
| AAG51388 unknown protein; 75639-73470 [Arabidopsis thaliana] | 1182 | 6e-127 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q84K00 NAC domain-containing protein 78 | 1515 | 6e-167 |
| Q9SV87 Protein BEARSKIN1 | 468 | 1e-045 |
| Q9C878 Protein BEARSKIN1 | 463 | 5e-045 |
| Q7GCL7 NAC domain-containing protein 74 | 458 | 2e-044 |
| Q9FWX2 NAC domain-containing protein 7 | 457 | 3e-044 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q949N0 Putative uncharacterized protein At3g10500 | 1182 | 4e-127 |
| Q9SQY1 NAC, putative | 1182 | 4e-127 |
| Q8LAH6 NAC, putative | 1177 | 1e-126 |
| B9HL68 NAC domain protein, IPR003441 (Fragment) | 948 | 5e-100 |
| B9T308 Putative uncharacterized protein | 929 | 8e-098 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G04410.1 NAC2; transcription factor | 1515 | 5e-168 |
| AT3G10500.1 anac053 (Arabidopsis NAC domain containing protein 53); transcription factor | 1182 | 2e-129 |
| AT3G10480.2 no apical meristem (NAM) family protein | 652 | 6e-068 |
| AT3G10490.1 anac052 (Arabidopsis NAC domain containing protein 52); transcription factor | 643 | 6e-067 |
| AT3G10490.2 anac052 (Arabidopsis NAC domain containing protein 52); transcription factor | 643 | 6e-067 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
